Publications by authors named "Michael Pfrender"

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Detection of CRISPR-Cas-induced mutations in .
Swatantra Neupane, Michael E Pfrender, Li Wang, Sen Xu

bioRxiv· December 2025

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The mutation landscape of reveals evolutionary forces shaping genome stability.
Ruyun Deng, Feng Guo, Wen Wei, Michael E Pfrender, Jeff L Dudycha

bioRxiv· September 2025

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QTL identification and characterization of the recombination landscape of the mountain pine beetle (Dendroctonus ponderosae).
Camille Pushman, Gregory J Ragland, Michael E Pfrender, Barbara J Bentz, Ryan R Bracewell

G3 (Bethesda)· July 2025

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Understanding the genomics responses of freshwater zooplanktons to salinization: a research hotspot in a saltier world.
Ran Bi, Leyao Xiao, Lei Zhao, Bret L Coggins, Sen Xu, Michael E Pfrender

Genome· January 2025

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Rapid evolution of mitochondrion-related genes in haplodiploid arthropods.
Yiyuan Li, Gregg W C Thomas, Stephen Richards, Robert M Waterhouse, Xin Zhou, Michael E Pfrender

BMC Biol· October 2024

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Evaluating cell type deconvolution in FFPE breast tissue: application to benign breast disease.
Yuanhang Liu, Robert A Vierkant, Aditya Bhagwate, William A Jons, Melody L Stallings-Mann, Michael E Pfrender

NAR Genom Bioinform· September 2024

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The genome-wide signature of short-term temporal selection.
Michael Lynch, Wen Wei, Zhiqiang Ye, Michael Pfrender

Proc Natl Acad Sci U S A· July 2024

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Environment and shipping drive environmental DNA beta-diversity among commercial ports.
Jose Andrés, Paul Czechowski, Erin Grey, Mandana Saebi, Kara Andres, Michael E Pfrender

Mol Ecol· December 2023

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Evolutionary Insights from a Large-Scale Survey of Population-Genomic Variation.
Zhiqiang Ye, Wen Wei, Michael E Pfrender, Michael Lynch

Mol Biol Evol· November 2023

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Evolutionary Genomics of Sister Species Differing in Effective Population Sizes and Recombination Rates.
Zhiqiang Ye, Michael E Pfrender, Michael Lynch

Genome Biol Evol· November 2023

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Evolutionary Insights from a Large-scale Survey of Population-genomic Variation.
Zhiqiang Ye, Wen Wei, Michael Pfrender, Michael Lynch

bioRxiv· May 2023

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The Genome-wide Signature of Short-term Temporal Selection.
Michael Lynch, Wen Wei, Zhiqiang Ye, Michael Pfrender

bioRxiv· April 2023

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Quality control recommendations for RNASeq using FFPE samples based on pre-sequencing lab metrics and post-sequencing bioinformatics metrics.
Yuanhang Liu, Aditya Bhagwate, Stacey J Winham, Melissa T Stephens, Brent W Harker, Michael E Pfrender

BMC Med Genomics· September 2022

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Symptomatic, Presymptomatic, and Asymptomatic Transmission of SARS-CoV-2 in a University Student Population, August-November 2020.
Steven J Krieg, Jennifer J Schnur, Marie Lynn Miranda, Michael E Pfrender, Nitesh V Chawla

Public Health Rep· August 2022

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The road not taken: Evolution of tetrodotoxin resistance in the Sierra garter snake (Thamnophis couchii) by a path less travelled.
Jessica S Reimche, Robert E Del Carlo, Edmund D Brodie, Joel W McGlothlin, Karen Schlauch, Michael E Pfrender

Mol Ecol· July 2022

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Performance of Three Tests for SARS-CoV-2 on a University Campus Estimated Jointly with Bayesian Latent Class Modeling.
T Alex Perkins, Melissa Stephens, Wendy Alvarez Barrios, Sean Cavany, Liz Rulli, Michael E Pfrender

Microbiol Spectr· February 2022

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SARS-CoV-2 Variant Tracking and Mitigation During In-Person Learning at a Midwestern University in the 2020-2021 School Year.
Carolina Avendano, Aaron Lilienfeld, Liz Rulli, Melissa Stephens, Wendy Alvarez Barrios, Michael E Pfrender

JAMA Netw Open· February 2022

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Genome-Wide Allele-Specific Expression in Obligately Asexual Daphnia pulex and the Implications for the Genetic Basis of Asexuality.
Zhiqiang Ye, Xiaoqian Jiang, Michael E Pfrender, Michael Lynch

Genome Biol Evol· November 2021

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A Seed-Endophytic Strain With Antimicrobial Activity Has Genes for Novel Bacteriocin-Like Antimicrobial Peptides.
Jeanne Romero-Severson, Thomas E Moran, Donna G Shrader, Francisco R Fields, Susan Pandey-Joshi, Michael E Pfrender

Front Microbiol· September 2021

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Combining natural language processing and metabarcoding to reveal pathogen-environment associations.
David C Molik, DeAndre Tomlinson, Shane Davitt, Eric L Morgan, Matthew Sisk, Michael E Pfrender

PLoS Negl Trop Dis· April 2021

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The roles of vicariance and isolation by distance in shaping biotic diversification across an ancient archipelago: evidence from a Seychelles caecilian amphibian.
Simon T Maddock, Ronald A Nussbaum, Julia J Day, Leigh Latta, Mark Miller, Michael E Pfrender

BMC Evol Biol· August 2020

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The geographic mosaic in parallel: Matching patterns of newt tetrodotoxin levels and snake resistance in multiple predator-prey pairs.
Jessica S Reimche, Edmund D Brodie, Amber N Stokes, Erica J Ely, Haley A Moniz, Michael E Pfrender

J Anim Ecol· July 2020

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Uncovering Effects from the Structure of Metabarcode Sequences for Metagenetic and Microbiome Analysis.
David C Molik, Michael E Pfrender, Scott J Emrich

Methods Protoc· March 2020

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A comprehensive epigenomic analysis of phenotypically distinguishable, genetically identical female and male Daphnia pulex.
Jouni Kvist, Camila Gonçalves Athanàsio, Michael E Pfrender, James B Brown, John K Colbourne

BMC Genomics· January 2020

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