Publications by authors named "Michael W Berry"

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Navigating the Functional Landscape of Transcription Factors via Non-Negative Tensor Factorization Analysis of MEDLINE Abstracts.
Sujoy Roy, Daqing Yun, Behrouz Madahian, Michael W Berry, Lih-Yuan Deng

Front Bioeng Biotechnol· August 2017

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Classification of T cell movement tracks allows for prediction of cell function.
Reka K Kelemen, Gengen F He, Hannah L Woo, Thomas Lane, Caroline Rempe, Michael W Berry

Int J Comput Biol Drug Des· September 2014

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PolyLens: software for map-based visualisation and analysis of genome-scale polymorphism data.
Michael W Berry, Tiantian Gao, Ryhan Pathan, Gary W Stuart

Int J Comput Biol Drug Des· July 2013

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Latent Semantic Indexing of PubMed abstracts for identification of transcription factor candidates from microarray derived gene sets.
Sujoy Roy, Kevin Heinrich, Vinhthuy Phan, Michael W Berry, Ramin Homayouni

BMC Bioinformatics· October 2011

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Functional cohesion of gene sets determined by latent semantic indexing of PubMed abstracts.
Lijing Xu, Nicholas Furlotte, Yunyue Lin, Kevin Heinrich, Michael W Berry

PLoS One· April 2011

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Discovering gene functional relationships using FAUN (Feature Annotation Using Nonnegative matrix factorization).
Elina Tjioe, Michael W Berry, Ramin Homayouni

BMC Bioinformatics· October 2010

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Gene tree labeling using nonnegative matrix factorization on biomedical literature.
Kevin E Heinrich, Michael W Berry, Ramin Homayouni

Comput Intell Neurosci· May 2010

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Bioinformatic analysis reveals cRel as a regulator of a subset of interferon-stimulated genes.
Lai Wei, Meiyun Fan, Lijing Xu, Kevin Heinrich, Michael W Berry

J Interferon Cytokine Res· September 2008

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Gene clustering by latent semantic indexing of MEDLINE abstracts.
Ramin Homayouni, Kevin Heinrich, Lai Wei, Michael W Berry

Bioinformatics· January 2005

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An SVD-based comparison of nine whole eukaryotic genomes supports a coelomate rather than ecdysozoan lineage.
Gary W Stuart, Michael W Berry

BMC Bioinformatics· December 2004

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A comprehensive whole genome bacterial phylogeny using correlated peptide motifs defined in a high dimensional vector space.
Gary W Stuart, Michael W Berry

J Bioinform Comput Biol· October 2003

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