Publications by authors named "Michal Startek"

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MIND4OLIGOS: Determining the Monoisotopic Mass of Oligonucleotides Observed in High-Resolution Mass Spectrometry.
Piotr Prostko, Piotr Radziński, Michał Ciach, Youzhong Liu, Michał Startek

Anal Chem· June 2024

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OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data.
Julianus Pfeuffer, Chris Bielow, Samuel Wein, Kyowon Jeong, Eugen Netz, Michał Piotr Startek

Nat Methods· March 2024

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Envemind: Accurate Monoisotopic Mass Determination Based On Isotopic Envelope.
Piotr Radziński, Dirk Valkenborg, Michał Piotr Startek, Anna Gambin

J Am Soc Mass Spectrom· November 2022

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OpenTIMS, TimsPy, and TimsR: Open and Easy Access to timsTOF Raw Data.
Mateusz K Łącki, Michał P Startek, Sven Brehmer, Ute Distler, Stefan Tenzer

J Proteome Res· April 2021

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Masserstein: Linear regression of mass spectra by optimal transport.
Michał Aleksander Ciach, Błażej Miasojedow, Grzegorz Skoraczyński, Szymon Majewski, Michał Startek

Rapid Commun Mass Spectrom· September 2020

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IsoSpec2: Ultrafast Fine Structure Calculator.
Mateusz K Łącki, Dirk Valkenborg, Michał P Startek

Anal Chem· July 2020

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Jaccard/Tanimoto similarity test and estimation methods for biological presence-absence data.
Neo Christopher Chung, BłaŻej Miasojedow, Michał Startek, Anna Gambin

BMC Bioinformatics· December 2019

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masstodon: A Tool for Assigning Peaks and Modeling Electron Transfer Reactions in Top-Down Mass Spectrometry.
Mateusz K Łącki, Frederik Lermyte, Błażej Miasojedow, Michał P Startek, Frank Sobott

Anal Chem· February 2019

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Inferring transposons activity chronology by TRANScendence - TEs database and de-novo mining tool.
Michał Piotr Startek, Jakub Nogły, Agnieszka Gromadka, Dariusz Grzebelus, Anna Gambin

BMC Bioinformatics· October 2017

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IsoSpec: Hyperfast Fine Structure Calculator.
Mateusz K Łącki, Michał Startek, Dirk Valkenborg, Anna Gambin

Anal Chem· March 2017

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Computer-Assisted Synthetic Planning: The End of the Beginning.
Sara Szymkuć, Ewa P Gajewska, Tomasz Klucznik, Karol Molga, Piotr Dittwald, Michał Startek

Angew Chem Int Ed Engl· May 2016

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MuTAnT: a family of Mutator-like transposable elements targeting TA microsatellites in Medicago truncatula.
Krzysztof Stawujak, Michał Startek, Anna Gambin, Dariusz Grzebelus

Genetica· August 2015

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Genome-wide analyses of LINE-LINE-mediated nonallelic homologous recombination.
Michał Startek, Przemyslaw Szafranski, Tomasz Gambin, Ian M Campbell, Patricia Hixson

Nucleic Acids Res· February 2015

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Genomic parasites or symbionts? Modeling the effects of environmental pressure on transposition activity in asexual populations.
Michał Startek, Arnaud Le Rouzic, Pierre Capy, Dariusz Grzebelus, Anna Gambin

Theor Popul Biol· December 2013

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Chromosome conformation capture-on-chip analysis of long-range cis-interactions of the SOX9 promoter.
Marta Smyk, Przemyslaw Szafranski, Michał Startek, Anna Gambin, Paweł Stankiewicz

Chromosome Res· December 2013

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