Publications by authors named "Miha Mraz"

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Correction: SAILoR: Structure-aware inference of logic rules.
Žiga Pušnik, Miha Mraz, Nikolaj Zimic, Miha Moškon

PLoS One· March 2025

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Integrative protocol for quantifying cholesterol-related sterols in human serum samples and building decision support systems.
Eva Kočar, Sonja Katz, Žiga Pušnik, Cene Skubic, Tadeja Režen, Miha Mraz

STAR Protoc· September 2024

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Corrigendum to "Integration of omics data to generate and analyse COVID-19 specific genome-scale metabolic models" [Comput. Biol. Med. 145 (2022) 105428].
Tadeja Režen, Alexandre Martins, Miha Mraz, Nikolaj Zimic, Damjana Rozman

Comput Biol Med· August 2024

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SAILoR: Structure-Aware Inference of Logic Rules.
Žiga Pušnik, Miha Mraz, Nikolaj Zimic, Miha Moškon

PLoS One· June 2024

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COVID-19 and cholesterol biosynthesis: Towards innovative decision support systems.
Eva Kočar, Sonja Katz, Žiga Pušnik, Petra Bogovič, Gabriele Turel, Miha Mraz

iScience· October 2023

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Integrative computational modeling to unravel novel potential biomarkers in hepatocellular carcinoma.
Andrew Walakira, Cene Skubic, Nejc Nadižar, Damjana Rozman, Tadeja Režen, Miha Mraz

Comput Biol Med· June 2023

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A computational design of a programmable biological processor.
Miha Moškon, Žiga Pušnik, Lidija Stanovnik, Nikolaj Zimic, Miha Mraz

Biosystems· November 2022

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Review and assessment of Boolean approaches for inference of gene regulatory networks.
Žiga Pušnik, Miha Mraz, Nikolaj Zimic, Miha Moškon

Heliyon· August 2022

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Integration of omics data to generate and analyse COVID-19 specific genome-scale metabolic models.
Tadeja Režen, Alexandre Martins, Miha Mraz, Nikolaj Zimic, Damjana Rozman

Comput Biol Med· June 2022

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Guided extraction of genome-scale metabolic models for the integration and analysis of omics data.
Andrew Walakira, Damjana Rozman, Tadeja Režen, Miha Mraz, Miha Moškon

Comput Struct Biotechnol J· June 2021

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Field-programmable biological circuits and configurable (bio)logic blocks for distributed biological computing.
Miha Moškon, Žiga Pušnik, Nikolaj Zimic, Miha Mraz

Comput Biol Med· January 2021

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Common Transcriptional Program of Liver Fibrosis in Mouse Genetic Models and Humans.
Kaja Blagotinšek Cokan, Žiga Urlep, Miha Moškon, Miha Mraz, Xiang Yi Kong

Int J Mol Sci· January 2021

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Correction to: Computational analysis of viable parameter regions in models of synthetic biological systems.
Žiga Pušnik, Miha Mraz, Nikolaj Zimic, Miha Moškon

J Biol Eng· November 2019

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Computational analysis of viable parameter regions in models of synthetic biological systems.
Žiga Pušnik, Miha Mraz, Nikolaj Zimic, Miha Moškon

J Biol Eng· September 2019

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Initial state perturbations as a validation method for data-driven fuzzy models of cellular networks.
Lidija Magdevska, Miha Mraz, Nikolaj Zimic, Miha Moškon

BMC Bioinformatics· September 2018

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Computational Modelling of Liver Metabolism and its Applications in Research and the Clinics.
Tanja Cvitanović Tomaš, Miha Moškon, Miha Mraz, Damjana Rozman

Acta Chim Slov· June 2018

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Grohar: Automated Visualization of Genome-Scale Metabolic Models and Their Pathways.
Miha Moškon, Nikolaj Zimic, Miha Mraz

J Comput Biol· May 2018

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Computational Model: Sexual Aspects in Hepatic Metabolism and Abnormalities.
Tanja Cvitanović Tomaš, Žiga Urlep, Miha Moškon, Miha Mraz, Damjana Rozman

Front Physiol· April 2018

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Classical Mechanics Approach Applied to Analysis of Genetic Oscillators.
Anastasiia Vasylchenkova, Miha Mraz, Nikolaj Zimic, Miha Moskon

IEEE/ACM Trans Comput Biol Bioinform· November 2017

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Large-scale computational models of liver metabolism: How far from the clinics?
Tanja Cvitanović, Matthias C Reichert, Miha Moškon, Miha Mraz, Frank Lammert

Hepatology· October 2017

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Computational modelling of genome-scale metabolic networks and its application to CHO cell cultures.
Živa Rejc, Lidija Magdevska, Tilen Tršelič, Timotej Osolin, Rok Vodopivec, Jakob Mraz, Miha Mraz

Comput Biol Med· September 2017

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Computational Framework for Modeling Multiple Noncooperative Transcription Factor Binding and Its Application to the Analysis of Nuclear Factor Kappa B Oscillatory Response.
Manca Bizjak, Nikolaj Zimic, Miha Mraz, Miha Moškon

J Comput Biol· December 2016

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Fuzzy Logic as a Computational Tool for Quantitative Modelling of Biological Systems with Uncertain Kinetic Data.
Jure Bordon, Miha Moskon, Nikolaj Zimic, Miha Mraz

IEEE/ACM Trans Comput Biol Bioinform· July 2016

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Systematic Approach to Computational Design of Gene Regulatory Networks with Information Processing Capabilities.
Miha Moskon, Miha Mraz

IEEE/ACM Trans Comput Biol Bioinform· March 2016

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Stochastic simulation algorithm for gene regulatory networks with multiple binding sites.
Mattia Petroni, Nikolaj Zimic, Miha Mraz, Miha Moškon

J Comput Biol· March 2015

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