Publications by authors named "Mike L Smith"

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Genome-wide quantification of transcription factor binding at single-DNA-molecule resolution using methyl-transferase footprinting.
Rozemarijn W D Kleinendorst, Guido Barzaghi, Mike L Smith, Judith B Zaugg, Arnaud R Krebs

Nat Protoc· December 2021

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Genome-wide Screens Implicate Loss of Cullin Ring Ligase 3 in Persistent Proliferation and Genome Instability in TP53-Deficient Cells.
Alexandros P Drainas, Ruxandra A Lambuta, Irina Ivanova, Özdemirhan Serçin, Ioannis Sarropoulos, Mike L Smith

Cell Rep· April 2020

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Orchestrating single-cell analysis with Bioconductor.
Robert A Amezquita, Aaron T L Lun, Etienne Becht, Vince J Carey, Lindsay N Carpp, Mike L Smith

Nat Methods· February 2020

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Publisher Correction: Orchestrating single-cell analysis with Bioconductor.
Robert A Amezquita, Aaron T L Lun, Etienne Becht, Vince J Carey, Lindsay N Carpp, Mike L Smith

Nat Methods· February 2020

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Publisher Correction: Telomerecat: A ploidy-agnostic method for estimating telomere length from whole genome sequencing data.
James H R Farmery, Mike L Smith, , Andy G Lynch

Sci Rep· September 2018

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beachmat: A Bioconductor C++ API for accessing high-throughput biological data from a variety of R matrix types.
Aaron T L Lun, Hervé Pagès, Mike L Smith

PLoS Comput Biol· May 2018

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Telomerecat: A ploidy-agnostic method for estimating telomere length from whole genome sequencing data.
James H R Farmery, Mike L Smith, , Andy G Lynch

Sci Rep· January 2018

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Potential for Psorophora columbiae and Psorophora ciliata Mosquitoes (Diptera: Culicidae) to Transmit Rift Valley Fever Virus.
Michael J Turell, Seth C Britch, Robert L Aldridge, Rui-De Xue, Mike L Smith

J Med Entomol· September 2015

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Ordering of mutations in preinvasive disease stages of esophageal carcinogenesis.
Jamie M J Weaver, Caryn S Ross-Innes, Nicholas Shannon, Andy G Lynch, Tim Forshew, Laura Smith, Mike L Smith

Nat Genet· August 2014

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illuminaio: An open source IDAT parsing tool for Illumina microarrays.
Mike L Smith, Keith A Baggerly, Henrik Bengtsson, Matthew E Ritchie, Kasper D Hansen

F1000Res· April 2014

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Evaluation of Pioneer eco-backpack sprayer and Twister XL backpack sprayer using Aqualuer against caged adult Aedes albopictus and Culex quinquefasciatus.
Rui-De Xue, Whitney A Qualls, Mike L Smith, Tong-Yan Zhao, James R Brown

J Am Mosq Control Assoc· December 2012

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BeadArray expression analysis using bioconductor.
Matthew E Ritchie, Mark J Dunning, Mike L Smith, Wei Shi, Andy G Lynch

PLoS Comput Biol· December 2011

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Field evaluation of commercial repellents against the floodwater mosquito Psorophora columbiae (Diptera: Culicidae) in St. Johns County, Florida.
Whitney A Qualls, Rui-De Xue, J Adam Holt, Mike L Smith, Jeanne J Moeller

J Med Entomol· November 2011

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BayesPeak--an R package for analysing ChIP-seq data.
Jonathan Cairns, Christiana Spyrou, Rory Stark, Mike L Smith, Andy G Lynch

Bioinformatics· March 2011

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BeadDataPackR: A Tool to Facilitate the Sharing of Raw Data from Illumina BeadArray Studies.
Mike L Smith, Andy G Lynch

Cancer Inform· September 2010

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Identification and correction of previously unreported spatial phenomena using raw Illumina BeadArray data.
Mike L Smith, Mark J Dunning, Simon Tavaré, Andy G Lynch

BMC Bioinformatics· April 2010

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beadarray: R classes and methods for Illumina bead-based data.
Mark J Dunning, Mike L Smith, Matthew E Ritchie, Simon Tavaré

Bioinformatics· August 2007

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