Publications by authors named "Muhammad Danial"

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Robust Prediction of Protein-Ligand Binding Potency with Multi-modal Customized Gate Control.
Bofei Xu, Wenting Tang, Danial Muhammad, Yuqi Yin, Zhirong Liu

J Chem Inf Model· October 2025

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From binding to detox: A predictive framework for supramolecular drug capture by cucurbiturils.
Xiaohui Wang, Zijing Wu, Zhihao Gong, Danial Muhammad, Baochuan Hu

J Chem Phys· August 2025

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Molecular glue-augmented E2-ubiquitin recognition from a computational approach.
Danial Muhammad, Wei Xia, Musheng Wang, Zhaoxi Sun, John Z H Zhang

Int J Biol Macromol· May 2025

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Corrigendum to" Molecular glue-augmented E2-ubiquitin recognition from a computational approach" [Int. J. Biol. Macromol. Volume 306, Part 1, 2025, 141454].
Danial Muhammad, Wei Xia, Musheng Wang, Zhaoxi Sun, John Z H Zhang

Int J Biol Macromol· May 2025

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Divergent evolution of genes in the genus : impacts of annuals and perennials' life history strategies.
Abu Bakar Sultan, Humera Nawaz, Fozia Saleem, Sehar Nawaz, Muhammad Danial

Front Plant Sci· July 2024

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Perioperative sildenafil therapy in pulmonary hypertension associated with congenital cardiac disease: An updated meta-analysis.
Shajie Ur Rehman Usmani, Syed Umar Hasan, Syed Hasan Ali, Syeda Hoorulain Ahmed, Neha Pervez, Muhammad Danial

Asian J Surg· June 2024

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Machine learning-based drug design for identification of thymidylate kinase inhibitors as a potential anti-Mycobacterium tuberculosis.
Muhammad Shahab, Muhammad Danial, Xiuyuan Duan, Taimur Khan, Chaoqun Liang

J Biomol Struct Dyn· May 2024

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Factor Xa inhibitors vs. warfarin in patients with Hughes syndrome: a systematic review and meta-analysis of randomized controlled trials.
Ali Mohtashim, Aima Azhar, Saad Mazhar, Deepa Devi, Muhammad Danial

Ann Med Surg (Lond)· May 2024

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Insights into Covid-19 mortality: A comprehensive study of cardiovascular sensitivity, gender, race, and geography trends in the United States (2020-2023).
Adarsh Raja, Owais Khan, Raja Subhash Sagar, Rohet Kumar, Parshant Dileep Bhimani, Muhammad Danial

Curr Probl Cardiol· April 2024

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In Silico Prediction of New Inhibitors for Kirsten Rat Sarcoma G12D Cancer Drug Target Using Machine Learning-Based Virtual Screening, Molecular Docking, and Molecular Dynamic Simulation Approaches.
Amar Ajmal, Muhammad Danial, Maryam Zulfat, Muhammad Numan, Sidra Zakir

Pharmaceuticals (Basel)· April 2024

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Effects of Co-Fermentation of and on Digestive and Quality Properties of Steamed Bread.
Yan Liu, Muhammad Danial, Linlin Liu, Faizan Ahmed Sadiq, Xiaorong Wei

Foods· September 2023

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Identification of Drug Targets and Their Inhibitors in Strain 91001 through Subtractive Genomics, Machine Learning, and MD Simulation Approaches.
Hamid Ali, Abdus Samad, Amar Ajmal, Amjad Ali, Ijaz Ali, Muhammad Danial

Pharmaceuticals (Basel)· August 2023

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Evolution of NLR genes in genus Arachis reveals asymmetric expansion of NLRome in wild and domesticated tetraploid species.
Muhammad Rizwan, Syed Zeeshan Haider, Abu Bakar, Shamiza Rani, Muhammad Danial

Sci Rep· June 2023

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Investigation of NLR Genes Reveals Divergent Evolution on NLRome in Diploid and Polyploid Species in Genus .
Amna Areej, Hummera Nawaz, Iqra Aslam, Muhammad Danial, Zohaib Qayyum

Genes (Basel)· April 2023

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In Silico Identification of Lead Compounds for Pseudomonas Aeruginosa PqsA Enzyme: Computational Study to Block Biofilm Formation.
Muhammad Shahab, Muhammad Danial, Taimur Khan, Chaoqun Liang, Xiuyuan Duan

Biomedicines· March 2023

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Dynamic Evolution of Genes in Dalbergioids.
Shamiza Rani, Ramlah Zahra, Abu Bakar, Muhammad Rizwan, Abu-Bakar Sultan, Muhammad Danial

Genes (Basel)· January 2023

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Transcriptional Regulatory Mechanism of Differential Metabolite Formation in Root and Stem of Ephedra sinica.
Zhang-Xuan Guo, Xiao-Ke Li, Jin-Long Cui, Shuang-Man Miao, Meng-Liang Wang, Muhammad Danial

Appl Biochem Biotechnol· November 2022

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FOXD3 Regulates Pluripotent Stem Cell Potential by Simultaneously Initiating and Repressing Enhancer Activity.
Raga Krishnakumar, Amy F Chen, Marisol G Pantovich, Muhammad Danial, Ronald J Parchem

Cell Stem Cell· August 2018

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FOXD3 Regulates Pluripotent Stem Cell Potential by Simultaneously Initiating and Repressing Enhancer Activity.
Raga Krishnakumar, Amy F Chen, Marisol G Pantovich, Muhammad Danial, Ronald J Parchem

Cell Stem Cell· January 2016

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Let-7 and miR-125 cooperate to prime progenitors for astrogliogenesis.
Archana Shenoy, Muhammad Danial, Robert H Blelloch

EMBO J· May 2015

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