Publications by authors named "Naim Matasci"

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Integrating Ultra-Coarse-Grained Protein Models into Accessible Workflows for Multiscale Molecular Dynamics.
Bryce Tu Chi, Stephanie Fulcar, Jonathan Ipe, Olivia Schleifer, Rohan Subramanian, Naim Matasci

ACS Omega· November 2025

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Monitoring the rate and variability of somatic genomic alterations using long-read sequencing.
Xingyao Chen, Hagai Ligumsky, Charlie Ambrose, Denisse Sibrian, Brian Tran, Naim Matasci

Sci Rep· June 2025

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A novel thin plate spline methodology to model tissue surfaces and quantify tumor cell invasion in organ-on-chip models.
Elizabeth Elton, Carly Strelez, Nolan Ung, Rachel Perez, Kimya Ghaffarian, Naim Matasci

SLAS Discov· June 2024

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A novel thin plate spline methodology to model tissue surfaces and quantify tumor cell invasion in organ-on-chip models.
Elizabeth Elton, Carly Strelez, Nolan Ung, Rachel Perez, Kimya Ghaffarian, Naim Matasci

bioRxiv· November 2023

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Immune biomarkers associated with COVID-19 disease severity in an urban, hospitalized population.
Allison B Chambliss, Mayada Aljehani, Brian Tran, Xingyao Chen, Elizabeth Elton, Naim Matasci

Pract Lab Med· August 2023

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Adaptation of Imaging Mass Cytometry to Explore the Single Cell Alloimmune Landscape of Liver Transplant Rejection.
Nolan Ung, Cameron Goldbeck, Cassandra Man, Julianne Hoeflich, Ren Sun, Naim Matasci

Front Immunol· April 2022

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Imaging-Based Machine Learning Analysis of Patient-Derived Tumor Organoid Drug Response.
Erin R Spiller, Nolan Ung, Seungil Kim, Katherin Patsch, Roy Lau, Naim Matasci

Front Oncol· December 2021

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Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP).
Eric J Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Shuangxiu Wu, Jing Sun

Gigascience· October 2019

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Monitoring dynamic cytotoxic chemotherapy response in castration-resistant prostate cancer using plasma cell-free DNA (cfDNA).
Katherin Patsch, Naim Matasci, Anjana Soundararajan, Patricia Diaz, David B Agus

BMC Res Notes· May 2019

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Data mining with iPlant: a meeting report from the 2013 GARNet workshop, Data mining with iPlant.
Lisa Martin, Charis Cook, Naim Matasci, Jason Williams, Ruth Bastow

J Exp Bot· January 2015

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Data access for the 1,000 Plants (1KP) project.
Naim Matasci, Ling-Hong Hung, Zhixiang Yan, Eric J Carpenter, Norman J Wickett

Gigascience· January 2015

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Phylotranscriptomic analysis of the origin and early diversification of land plants.
Norman J Wickett, Siavash Mirarab, Nam Nguyen, Tandy Warnow, Eric Carpenter, Naim Matasci

Proc Natl Acad Sci U S A· November 2014

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Vitis phylogenomics: hybridization intensities from a SNP array outperform genotype calls.
Allison J Miller, Naim Matasci, Heidi Schwaninger, Mallikarjuna K Aradhya, Bernard Prins

PLoS One· September 2014

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Phylogenetic analysis with the iPlant discovery environment.
Naim Matasci, Sheldon McKay

Curr Protoc Bioinformatics· June 2013

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Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient.
Arlin Stoltzfus, Hilmar Lapp, Naim Matasci, Helena Deus, Brian Sidlauskas

BMC Bioinformatics· May 2013

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The taxonomic name resolution service: an online tool for automated standardization of plant names.
Brad Boyle, Nicole Hopkins, Zhenyuan Lu, Juan Antonio Raygoza Garay, Dmitry Mozzherin, Naim Matasci

BMC Bioinformatics· January 2013

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The iPlant Collaborative: Cyberinfrastructure for Plant Biology.
Stephen A Goff, Matthew Vaughn, Sheldon McKay, Eric Lyons, Ann E Stapleton, Naim Matasci

Front Plant Sci· August 2012

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