Publications by authors named "Nancy Hansen"

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Feeling excluded in financial environments: Challenges and strategies to promote financial inclusion for adults with post-stroke communication disabilities.
Elaheh Keshavarz, Nancy Hansen, Jerry Buckland, Lisa Engel

J Commun Disord· November 2025

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A complete diploid human genome benchmark for personalized genomics.
Nancy F Hansen, Nathan Dwarshuis, Hyun Joo Ji, Arang Rhie, Hailey Loucks

bioRxiv· September 2025

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Random forest classifiers trained on simulated data enable accurate short read-based genotyping of structural variants in the alpha globin region at Chr16p13.3.
Nancy F Hansen, Xunde Wang, Mickias B Tegegn, Zhi Liu, Mateus H Gouveia

bioRxiv· November 2023

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The complete sequence of a human Y chromosome.
Arang Rhie, Sergey Nurk, Monika Cechova, Savannah J Hoyt, Dylan J Taylor, Nancy F Hansen

Nature· September 2023

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Long-read mapping to repetitive reference sequences using Winnowmap2.
Chirag Jain, Arang Rhie, Nancy F Hansen, Sergey Koren, Adam M Phillippy

Nat Methods· June 2022

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A complete reference genome improves analysis of human genetic variation.
Sergey Aganezov, Stephanie M Yan, Daniela C Soto, Melanie Kirsche, Samantha Zarate, Nancy F Hansen

Science· April 2022

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KLF3 and PAX6 are candidate driver genes in late-stage, MSI-hypermutated endometrioid endometrial carcinomas.
Meghan L Rudd, Nancy F Hansen, Xiaolu Zhang, Mary Ellen Urick, Suiyuan Zhang

PLoS One· February 2022

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A robust benchmark for detection of germline large deletions and insertions.
Justin M Zook, Nancy F Hansen, Nathan D Olson, Lesley Chapman, James C Mullikin

Nat Biotechnol· November 2020

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Author Correction: A robust benchmark for detection of germline large deletions and insertions.
Justin M Zook, Nancy F Hansen, Nathan D Olson, Lesley Chapman, James C Mullikin

Nat Biotechnol· November 2020

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Telomere-to-telomere assembly of a complete human X chromosome.
Karen H Miga, Sergey Koren, Arang Rhie, Mitchell R Vollger, Ariel Gershman, Nancy F Hansen

Nature· September 2020

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Admixture mapping identifies genetic regions associated with blood pressure phenotypes in African Americans.
Zhi Liu, Daniel Shriner, Nancy F Hansen, Charles N Rotimi, James C Mullikin

PLoS One· July 2020

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Comparative clinical and genomic analysis of neurofibromatosis type 2-associated cranial and spinal meningiomas.
Alexander Pemov, Ramita Dewan, Nancy F Hansen, Settara C Chandrasekharappa, Abhik Ray-Chaudhury

Sci Rep· July 2020

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NovoGraph: Human genome graph construction from multiple long-read assemblies.
Evan Biederstedt, Jeffrey C Oliver, Nancy F Hansen, Aarti Jajoo, Nathan Dunn

F1000Res· November 2019

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Low mutation burden and frequent loss of CDKN2A/B and SMARCA2, but not PRC2, define premalignant neurofibromatosis type 1-associated atypical neurofibromas.
Alexander Pemov, Nancy F Hansen, Sivasish Sindiri, Rajesh Patidar, Christine S Higham

Neuro Oncol· August 2019

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The Sleep Inbred Panel, a Collection of Inbred with Extreme Long and Short Sleep Duration.
Yazmin L Serrano Negron, Nancy F Hansen, Susan T Harbison

G3 (Bethesda)· August 2018

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The FOXA2 transcription factor is frequently somatically mutated in uterine carcinosarcomas and carcinomas.
Matthieu Le Gallo, Meghan L Rudd, Mary Ellen Urick, Nancy F Hansen,

Cancer· January 2018

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Selection for long and short sleep duration in Drosophila melanogaster reveals the complex genetic network underlying natural variation in sleep.
Susan T Harbison, Yazmin L Serrano Negron, Nancy F Hansen, Amanda S Lobell

PLoS Genet· December 2017

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Somatic mutation profiles of clear cell endometrial tumors revealed by whole exome and targeted gene sequencing.
Matthieu Le Gallo, Meghan L Rudd, Mary Ellen Urick, Nancy F Hansen, Suiyuan Zhang

Cancer· September 2017

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iPSCs and fibroblast subclones from the same fibroblast population contain comparable levels of sequence variations.
Erika M Kwon, John P Connelly, Nancy F Hansen, Frank X Donovan, Thomas Winkler

Proc Natl Acad Sci U S A· February 2017

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First insight into the somatic mutation burden of neurofibromatosis type 2-associated grade I and grade II meningiomas: a case report comprehensive genomic study of two cranial meningiomas with vastly different clinical presentation.
Ramita Dewan, Alexander Pemov, Amalia S Dutra, Evgenia D Pak, Nancy A Edwards, Nancy F Hansen

BMC Cancer· February 2017

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Variant Calling From Next Generation Sequence Data.
Nancy F Hansen

Methods Mol Biol· December 2016

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The transcription factors Ets1 and Sox10 interact during murine melanocyte development.
Amy Saldana-Caboverde, Erasmo M Perera, Dawn E Watkins-Chow, Nancy F Hansen, Meghana Vemulapalli

Dev Biol· November 2015

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Evaluation of variant detection software for pooled next-generation sequence data.
Howard W Huang, , James C Mullikin, Nancy F Hansen

BMC Bioinformatics· July 2015

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Mutational analysis of the tyrosine kinome in serous and clear cell endometrial cancer uncovers rare somatic mutations in TNK2 and DDR1.
Meghan L Rudd, Hassan Mohamed, Jessica C Price, Andrea J O'Hara, Matthieu Le Gallo, Nancy F Hansen

BMC Cancer· November 2014

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