Publications by authors named "Naoki Shigi"

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Hypoxia-induced ribosomal RNA modifications in the peptidyl-transferase center contribute to anaerobic growth of bacteria.
Kensuke Ishiguro, Karin Midorikawa, Naoki Shigi, Satoshi Kimura, Aivar Liiv

Mol Cell· December 2025

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Functional redundancy of ubiquitin-like sulfur-carrier proteins facilitates flexible, efficient sulfur utilization in the primordial archaeon .
Ryota Hidese, Takayuki Ohira, Satsuki Sakakibara, Tsutomu Suzuki, Naoki Shigi

mBio· August 2024

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A selective and sensitive detection system for 4-thiouridine modification in RNA.
Yuzuru Sugio, Ryota Yamagami, Naoki Shigi, Hiroyuki Hori

RNA· February 2023

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Biosynthesis and Degradation of Sulfur Modifications in tRNAs.
Naoki Shigi

Int J Mol Sci· November 2021

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The [4Fe-4S] cluster of sulfurtransferase TtuA desulfurizes TtuB during tRNA modification in Thermus thermophilus.
Minghao Chen, Masato Ishizaka, Shun Narai, Masaki Horitani, Naoki Shigi

Commun Biol· April 2020

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An ancient type of MnmA protein is an iron-sulfur cluster-dependent sulfurtransferase for tRNA anticodons.
Naoki Shigi, Masaki Horitani, Kenjyo Miyauchi, Tsutomu Suzuki, Misao Kuroki

RNA· March 2020

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Recent Advances in Our Understanding of the Biosynthesis of Sulfur Modifications in tRNAs.
Naoki Shigi

Front Microbiol· November 2018

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Biochemical and structural characterization of oxygen-sensitive 2-thiouridine synthesis catalyzed by an iron-sulfur protein TtuA.
Minghao Chen, Shin-Ichi Asai, Shun Narai, Shusuke Nambu, Naoki Omura, Naoki Shigi

Proc Natl Acad Sci U S A· May 2017

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Identification of a rhodanese-like protein involved in thiouridine biosynthesis in Thermus thermophilus tRNA.
Naoki Shigi, Shin-Ichi Asai, Kimitsuna Watanabe

FEBS Lett· December 2016

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Crystallographic study of the 2-thioribothymidine-synthetic complex TtuA-TtuB from Thermus thermophilus.
Minghao Chen, Shun Narai, Naoki Omura, Naoki Shigi, Sarin Chimnaronk

Acta Crystallogr F Struct Biol Commun· October 2016

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Folate-/FAD-dependent tRNA methyltransferase from Thermus thermophilus regulates other modifications in tRNA at low temperatures.
Ryota Yamagami, Chie Tomikawa, Naoki Shigi, Ai Kazayama, Shin-Ichi Asai

Genes Cells· July 2016

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Substrate tRNA recognition mechanism of eubacterial tRNA (m1A58) methyltransferase (TrmI).
Hiroyuki Takuma, Natsumi Ushio, Masayuki Minoji, Ai Kazayama, Naoki Shigi

J Biol Chem· February 2015

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Biosynthesis and functions of sulfur modifications in tRNA.
Naoki Shigi

Front Genet· June 2014

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Crystallographic and mutational studies on the tRNA thiouridine synthetase TtuA.
Hirofumi Nakagawa, Mitsuo Kuratani, Sakurako Goto-Ito, Takuhiro Ito, Kazushige Katsura, Naoki Shigi

Proteins· July 2013

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Posttranslational modification of cellular proteins by a ubiquitin-like protein in bacteria.
Naoki Shigi

J Biol Chem· May 2012

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Taurine-containing uridine modifications in tRNA anticodons are required to decipher non-universal genetic codes in ascidian mitochondria.
Takeo Suzuki, Kenjyo Miyauchi, Tsutomu Suzuki, Shin-Ichi Yokobori, Naoki Shigi

J Biol Chem· October 2011

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[Functions and biosynthesis pathway of sulfur-modifications in tRNA].
Naoki Shigi

Seikagaku· July 2010

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Common thiolation mechanism in the biosynthesis of tRNA thiouridine and sulphur-containing cofactors.
Naoki Shigi, Yuriko Sakaguchi, Shin-Ichi Asai, Tsutomu Suzuki, Kimitsuna Watanabe

EMBO J· December 2008

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Identification of two tRNA thiolation genes required for cell growth at extremely high temperatures.
Naoki Shigi, Yuriko Sakaguchi, Tsutomu Suzuki, Kimitsuna Watanabe

J Biol Chem· May 2006

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Temperature-dependent biosynthesis of 2-thioribothymidine of Thermus thermophilus tRNA.
Naoki Shigi, Tsutomu Suzuki, Takaho Terada, Mikako Shirouzu, Shigeyuki Yokoyama

J Biol Chem· January 2006

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Mechanistic insights into sulfur relay by multiple sulfur mediators involved in thiouridine biosynthesis at tRNA wobble positions.
Yoshiho Ikeuchi, Naoki Shigi, Jun-Ichi Kato, Akiko Nishimura, Tsutomu Suzuki

Mol Cell· January 2006

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Conserved bases in the TPsi C loop of tRNA are determinants for thermophile-specific 2-thiouridylation at position 54.
Naoki Shigi, Tsutomu Suzuki, Masatada Tamakoshi, Tairo Oshima, Kimitsuna Watanabe

J Biol Chem· October 2002

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