Publications by authors named "Naoya Doi"

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Positive correlation between structural disorder of the HIV-1 Gag N-terminal segment and progeny virus particle formation.
Takaaki Koma, Osamu Kotani, Keisuke Kamba, Kei Miyakawa, Taiki Morita, Naoya Doi

J Virol· October 2025

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The role of HIV-1 Gag and genomic RNA interactions in virion assembly.
Takaaki Koma, Bao Quoc Le, Khanh Quoc Tran, Naoya Doi, Tomoyuki Kondo

Front Microbiol· September 2025

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3-Deazaguanosine inhibits SARS-CoV-2 viral replication and reduces the risk of COVID-19 pneumonia in hamster.
Noriko Saito-Tarashima, Takaaki Koma, Naoto Hinotani, Keigo Yoshida, Moka Ogasa, Naoya Doi

iScience· April 2025

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Involvement of a Rarely Used Splicing SD2b Site in the Regulation of HIV-1 mRNA Production as Revealed by a Growth-Adaptive Mutation.
Takaaki Koma, Naoya Doi, Bao Quoc Le, Tomoyuki Kondo, Mitsuki Ishizue

Viruses· December 2023

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The Expression Level of HIV-1 Vif Is Optimized by Nucleotide Changes in the Genomic SA1D2prox Region during the Viral Adaptation Process.
Takaaki Koma, Naoya Doi, Mai Takemoto, Kyosuke Watanabe, Hideki Yamamoto

Viruses· October 2021

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Species-Specific Valid Ternary Interactions of HIV-1 Env-gp120, CD4, and CCR5 as Revealed by an Adaptive Single-Amino Acid Substitution at the V3 Loop Tip.
Takaaki Koma, Masaru Yokoyama, Osamu Kotani, Naoya Doi, Nina Nakanishi

J Virol· June 2021

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Commentary: Derivation of Simian Tropic HIV-1 Infectious Clone Reveals Virus Adaptation to a New Host.
Akio Adachi, Takaaki Koma, Naoya Doi, Masako Nomaguchi

Front Cell Infect Microbiol· October 2020

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Toward Understanding Molecular Bases for Biological Diversification of Human Coronaviruses: Present Status and Future Perspectives.
Takaaki Koma, Shun Adachi, Naoya Doi, Akio Adachi, Masako Nomaguchi

Front Microbiol· August 2020

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Commentary: Origin and evolution of pathogenic coronaviruses.
Shun Adachi, Takaaki Koma, Naoya Doi, Masako Nomaguchi, Akio Adachi

Front Immunol· May 2020

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Expression Level of HIV-1 Vif Can Be Fluctuated by Natural Nucleotide Variations in the -Coding and Regulatory SA1D2prox Sequences of the Proviral Genome.
Naoya Doi, Takaaki Koma, Akio Adachi, Masako Nomaguchi

Front Microbiol· November 2019

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HIV-1 mutates to adapt in fluxing environments.
Masako Nomaguchi, Naoya Doi, Takaaki Koma, Akio Adachi

Microbes Infect· September 2019

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Allosteric Regulation of HIV-1 Capsid Structure for Gag Assembly, Virion Production, and Viral Infectivity by a Disordered Interdomain Linker.
Takaaki Koma, Osamu Kotani, Kei Miyakawa, Akihide Ryo, Masaru Yokoyama, Naoya Doi

J Virol· September 2019

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Role for Gag-CA Interdomain Linker in Primate Lentiviral Replication.
Naoya Doi, Takaaki Koma, Akio Adachi, Masako Nomaguchi

Front Microbiol· August 2019

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Concomitant Enhancement of HIV-1 Replication Potential and Neutralization-Resistance in Concert With Three Adaptive Mutations in Env V1/C2/C4 Domains.
Naoya Doi, Masaru Yokoyama, Takaaki Koma, Osamu Kotani, Hironori Sato

Front Microbiol· January 2019

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CXCR4- and CCR5-Tropic HIV-1 Clones Are Both Tractable to Grow in Rhesus Macaques.
Naoya Doi, Tomoyuki Miura, Hiromi Mori, Hiromi Sakawaki, Takaaki Koma

Front Microbiol· October 2018

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Virological characterization of HIV-1 CA-NTD mutants constructed in a virus-lineage reflected manner.
Shoko Nakanishi, Sakimi Watanabe, Naoya Doi, Takaaki Koma, Akio Adachi

J Med Invest· September 2018

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Generation and characterization of new CCR5-tropic HIV-1rmt clones.
Naoya Doi, Yosuke Sakai, Akio Adachi, Masako Nomaguchi

J Med Invest· June 2018

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Production of HIV-1 mRNA Is Modulated by Natural Nucleotide Variations and SLSA1 RNA Structure in SA1D2prox Genomic Region.
Masako Nomaguchi, Naoya Doi, Tomoya Yoshida, Takaaki Koma, Shun Adachi

Front Microbiol· December 2017

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Complete Genome Sequences of Human Immunodeficiency Type 1 Viruses Genetically Engineered To Be Tropic for Rhesus Macaques.
Masako Nomaguchi, Naoya Doi, Takaaki Koma, Akio Adachi

Genome Announc· September 2017

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Novel Screening System Based on Differential Scanning Fluorimetry to Search for Small Molecules against the Disassembly or Assembly of HIV-1 Capsid Protein.
Yasuyuki Miyazaki, Naoya Doi, Takaaki Koma, Akio Adachi, Masako Nomaguchi

Front Microbiol· July 2017

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Single-amino acid mutation 66SR in Gag-matrix enhances viral single-cycle infectivity of R5-tropic HIV-1rmt.
Naoya Doi, Yosuke Sakai, Yasuyuki Miyazaki, Akio Adachi, Masako Nomaguchi

J Med Invest· January 2017

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Phylogenetic Insights into the Functional Relationship between Primate Lentiviral Reverse Transcriptase and Accessory Proteins Vpx/Vpr.
Yosuke Sakai, Naoya Doi, Yasuyuki Miyazaki, Akio Adachi, Masako Nomaguchi

Front Microbiol· October 2016

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Expression Profiles of Vpx/Vpr Proteins Are Co-related with the Primate Lentiviral Lineage.
Yosuke Sakai, Ariko Miyake, Naoya Doi, Hikari Sasada, Yasuyuki Miyazaki

Front Microbiol· August 2016

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Natural Single-Nucleotide Variations in the HIV-1 Genomic SA1prox Region Can Alter Viral Replication Ability by Regulating Vif Expression Levels.
Masako Nomaguchi, Naoya Doi, Yosuke Sakai, Hirotaka Ode, Yasumasa Iwatani

J Virol· May 2016

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In silico Analysis of HIV-1 Env-gp120 Reveals Structural Bases for Viral Adaptation in Growth-Restrictive Cells.
Masaru Yokoyama, Masako Nomaguchi, Naoya Doi, Tadahito Kanda, Akio Adachi

Front Microbiol· February 2016

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