Publications by authors named "Nathalie Basdevant"

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Sequence and Force Effects on ssDNA Translocation through a Protein Nanopore: Coarse-Grained Steered Molecular Dynamics Simulations.
Cagla Okyay, Jérôme Mathé, Nathalie Basdevant

J Phys Chem B· December 2025

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Exploring ssDNA translocation through α-hemolysin using coarse-grained steered molecular dynamics.
Cagla Okyay, Delphine Dessaux, Rosa Ramirez, Jérôme Mathé, Nathalie Basdevant

Nanoscale· August 2024

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Current Rectification and Ionic Selectivity of α-Hemolysin: Coarse-Grained Molecular Dynamics Simulations.
Delphine Dessaux, Jérôme Mathé, Rosa Ramirez, Nathalie Basdevant

J Phys Chem B· June 2022

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Ionic transport through a protein nanopore: a Coarse-Grained Molecular Dynamics Study.
Nathalie Basdevant, Delphine Dessaux, Rosa Ramirez

Sci Rep· October 2019

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Interaction of chemokine receptor CXCR4 in monomeric and dimeric state with its endogenous ligand CXCL12: coarse-grained simulations identify differences.
Pasquale Cutolo, Nathalie Basdevant, Guillaume Bernadat, Françoise Bachelerie, Tâp Ha-Duong

J Biomol Struct Dyn· February 2017

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Structure of ring-shaped Aβ₄₂ oligomers determined by conformational selection.
Linh Tran, Nathalie Basdevant, Chantal Prévost, Tâp Ha-Duong

Sci Rep· February 2016

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Influence of GTP/GDP and magnesium ion on the solvated structure of the protein FtsZ: a molecular dynamics study.
Carla Jamous, Nathalie Basdevant, Tap Ha-Duong

J Biomol Struct Dyn· December 2014

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Modeling Protein-Protein Recognition in Solution Using the Coarse-Grained Force Field SCORPION.
Nathalie Basdevant, Daniel Borgis, Tap Ha-Duong

J Chem Theory Comput· January 2013

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A coarse-grained protein-protein potential derived from an all-atom force field.
Nathalie Basdevant, Daniel Borgis, Tap Ha-Duong

J Phys Chem B· August 2007

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Particle-Based Implicit Solvent Model for Biosimulations:  Application to Proteins and Nucleic Acids Hydration.
Nathalie Basdevant, Tap Ha-Duong, Daniel Borgis

J Chem Theory Comput· November 2006

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Thermodynamic basis for promiscuity and selectivity in protein-protein interactions: PDZ domains, a case study.
Nathalie Basdevant, Harel Weinstein, Marco Ceruso

J Am Chem Soc· October 2006

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A semi-implicit solvent model for the simulation of peptides and proteins.
Nathalie Basdevant, Daniel Borgis, Tap Ha-Duong

J Comput Chem· June 2004

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