Publications by authors named "Nathan Boley"

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Selective time-dependent changes in activity and cell-specific gene expression in human postmortem brain.
Fabien Dachet, James B Brown, Tibor Valyi-Nagy, Kunwar D Narayan, Anna Serafini, Nathan Boley, Thomas R Gingeras, Susan E Celniker, Gayatry Mohapatra, Jeffrey A Loeb

March 2021

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The ENCODE Uniform Analysis Pipelines.
Benjamin C Hitz, Jin-Wook Lee, Otto Jolanki, Meenakshi S Kagda, Keenan Graham, Nathan Boley

Res Sq· July 2023

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The ENCODE Uniform Analysis Pipelines.
Benjamin C Hitz, Lee Jin-Wook, Otto Jolanki, Meenakshi S Kagda, Keenan Graham, Nathan Boley

bioRxiv· April 2023

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Evaluation of cfDNA as an early detection assay for dense tissue breast cancer.
Mouadh Barbirou, Amanda A Miller, Erik Gafni, Amel Mezlini, Asma Zidi, Nathan Boley

Sci Rep· May 2022

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Machine learning enables detection of early-stage colorectal cancer by whole-genome sequencing of plasma cell-free DNA.
Nathan Wan, David Weinberg, Tzu-Yu Liu, Katherine Niehaus, Eric A Ariazi, Nathan Boley

BMC Cancer· August 2019

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GenomeDISCO: a concordance score for chromosome conformation capture experiments using random walks on contact map graphs.
Oana Ursu, Nathan Boley, Maryna Taranova, Y X Rachel Wang, Galip Gurkan Yardimci

Bioinformatics· August 2018

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Diversity and dynamics of the Drosophila transcriptome.
James B Brown, Nathan Boley, Robert Eisman, Gemma E May, Marcus H Stoiber

Nature· August 2014

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Comparative analysis of the transcriptome across distant species.
Mark B Gerstein, Joel Rozowsky, Koon-Kiu Yan, Daifeng Wang, Chao Cheng, Nathan P Boley

Nature· August 2014

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Comparative validation of the D. melanogaster modENCODE transcriptome annotation.
Zhen-Xia Chen, David Sturgill, Jiaxin Qu, Huaiyang Jiang, Soo Park, Nathan Boley

Genome Res· July 2014

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Navigating and mining modENCODE data.
Nathan Boley, Kenneth H Wan, Peter J Bickel, Susan E Celniker

Methods· June 2014

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Genome-guided transcript assembly by integrative analysis of RNA sequence data.
Nathan Boley, Marcus H Stoiber, Benjamin W Booth, Kenneth H Wan, Roger A Hoskins

Nat Biotechnol· April 2014

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The developmental transcriptome of Drosophila melanogaster.
Brenton R Graveley, Angela N Brooks, Joseph W Carlson, Michael O Duff, Jane M Landolin, Nathan Boley

Nature· March 2011

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Genome-wide analysis of promoter architecture in Drosophila melanogaster.
Roger A Hoskins, Jane M Landolin, James B Brown, Jeremy E Sandler, Hazuki Takahashi, Nathan Boley

Genome Res· February 2011

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