Publications by authors named "Nathan Clark"

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MoleRate: comparing molecular relative evolutionary rates to detect convergent evolution.
Avery G Selberg, Nathan Clark, Anton Nekrutenko, Maria Chikina, Sergei L Kosakovsky Pond

Evolution· December 2025

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Phylogenomic Approaches to Study Adaptive Evolution in Mammals: From Aging to Aquatic Lifestyles.
Nathan L Clark, Amanda Kowalczyk, Emily E K Kopania, Maria Chikina

Annu Rev Genet· November 2025

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Visualization of liquid-liquid phase transitions using a tiny G-quadruplex binding protein.
Bikash R Sahoo, Xiexiong Deng, Ee Lin Wong, Nathan Clark, Harry J Yang

bioRxiv· September 2025

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ERC2.0 evolutionary rate covariation update improves inference of functional interactions across large phylogenies.
Jordan H Little, Guillermo Hoffmann Meyer, Aakash Grover, Alex Michael Francette, Raghavendran Partha, Nathan Clark

Genome Res· September 2025

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Female membrane proteins regulate postmating ovulation in by ovulin-dependent and -independent pathways.
Mengye Yang, Melissa A White, Geoffrey D Findlay, Ryan C Vignogna, Jennifer Apger-McGlaughon, Nathan L Clark

Proc Natl Acad Sci U S A· September 2025

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Visualization of liquid-liquid phase transitions using a tiny G-quadruplex binding protein.
Bikash R Sahoo, Xiexiong Deng, Ee Lin Wong, Nathan Clark, Harry J Yang

Nat Commun· September 2025

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Ultra-fast variant effect prediction using biophysical transcription factor binding models.
Rezwan Hosseini, Ali Tugrul Balci, Dennis Kostka, Nathan Clark, Maria Chikina

Nucleic Acids Res· September 2025

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Integrating Intermediate Traits in Phylogenetic Genotype-to-Phenotype Studies.
Nathan L Clark, Chris Todd Hittinger, Hongmei Li-Byarlay, Antonis Rokas, Timothy B Sackton

Integr Comp Biol· July 2025

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Convergent reduction of olfactory genes and olfactory bulb size in mammalian species at altitude.
Allie M Graham, Elysia Saputra, Bogdan Kirilenko, Jason S Presnell, Arianna Harrington, Nathan Clark

Curr Biol· July 2025

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Prediction of local convergent shifts in evolutionary rates with phyloConverge.
Elysia Saputra, Weiguang Mao, Guillermo Hoffmann Meyer, Nathan Clark, Maria Chikina

Bioinformatics· July 2025

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Congenital Aphakia Associated With a Pathogenic Variant: A Case Report.
Sarah A M Lucas, Elena Franco, Hannah L Scanga, Nathan L Clark, Ken K Nischal

Clin Case Rep· May 2025

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Impact of cytochrome P-450 3A4 enzyme/P-glycoprotein inducing antiseizure medications on direct oral anticoagulant therapy.
Sean M McNary, Madalyn Kuhlenberg, Lucia F Basilio, Nathan P Clark, Rita L Hui

Blood Coagul Fibrinolysis· April 2025

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Mammalian retinal specializations for high acuity vision evolve in response to both foraging strategies and morphological constraints.
Emily E K Kopania, Nathan L Clark

Evol Lett· April 2025

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Minus the Error: Testing for Positive Selection in the Presence of Residual Alignment Errors.
Avery Selberg, Nathan L Clark, Timothy B Sackton, Spencer V Muse, Alexander G Lucaci

bioRxiv· March 2025

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The Shu complex interacts with the replicative helicase to prevent mutations and aberrant recombination.
Adeola A Fagunloye, Alessio De Magis, Jordan H Little, Isabela Contreras, Tanis J Dorwart, Nathan Clark

EMBO J· March 2025

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Phylogenetic Signal in Primate Tooth Enamel Proteins and its Relevance for Paleoproteomics.
Ricardo Fong-Zazueta, Johanna Krueger, David M Alba, Xènia Aymerich, Robin M D Beck, Nathan Clark

Genome Biol Evol· February 2025

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ERC 2.0 - evolutionary rate covariation update improves inference of functional interactions across large phylogenies.
Jordan Little, Guillermo Hoffmann Meyer, Aakash Grover, Alex Michael Francette, Raghavendran Partha, Nathan Clark

bioRxiv· February 2025

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Unearthing the secrets of Australia's most enigmatic and cryptic mammal, the marsupial mole.
Stephen R Frankenberg, Sarah Lucas, Charles Y Feigin, Liliya Doronina, Raphael Steffen, Michael Clark, Nathan Clark

Sci Adv· January 2025

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Sperm competition intensity shapes divergence in both sperm morphology and reproductive genes across murine rodents.
Emily E K Kopania, Gregg W C Thomas, Carl R Hutter, Sebastian M E Mortimer, Colin M Callahan, Nathan L Clark

Evolution· December 2024

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RERconverge Expansion: Using Relative Evolutionary Rates to Study Complex Categorical Trait Evolution.
Ruby Redlich, Amanda Kowalczyk, Michael Tene, Heather H Sestili, Kathleen Foley, Nathan Clark

Mol Biol Evol· November 2024

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Evolutionary rate covariation is pervasive between glycosylation pathways and points to potential disease modifiers.
Holly J Thorpe, Raghavendran Partha, Jordan Little, Nathan L Clark, Clement Y Chow

PLoS Genet· September 2024

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Protein G-quadruplex interactions and their effects on phase transitions and protein aggregation.
Bikash R Sahoo, Vojč Kocman, Nathan Clark, Nikhil Myers, Xiexiong Deng

Nucleic Acids Res· May 2024

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Vocal learning-associated convergent evolution in mammalian proteins and regulatory elements.
Morgan E Wirthlin, Tobias A Schmid, Julie E Elie, Xiaomeng Zhang, Amanda Kowalczyk, Nathan L Clark

Science· March 2024

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Evolutionary rate covariation is a reliable predictor of co-functional interactions but not necessarily physical interactions.
Jordan Little, Maria Chikina, Nathan L Clark

Elife· February 2024

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Exploring the impacts of social media and crowdsourcing on disaster resilience.
Nathan Clark, Kees Boersma, Sara Bonati, Chiara Fonio, Simon Gehlhar

Open Res Eur· January 2024

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