Publications by authors named "Nathan D Grubaugh"

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Phylogenetic insights into the transmission dynamics of arthropod-borne viruses.
Verity Hill, Simon Dellicour, Marta Giovanetti, Nathan D Grubaugh

Nat Rev Genet· January 2026

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Epidemiology and severity risk factors of dengue virus infection during the 2023-2024 outbreak in Colombia.
Daniela Torres-Hernández, Nathan D Grubaugh, Mónica A Murillo-Ortiz, Isabel C Hurtado, Verity Hill

PLoS Negl Trop Dis· December 2025

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The importance of epistasis in the evolution of viral pathogens.
Swathi Nachiar Manivannan, Carolina Diaz Arenas, Nathan D Grubaugh, C Brandon Ogbunugafor

Virus Evol· December 2025

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The coronaviral landscape across diverse mammalian species in the Northeastern United States.
Sylvester Ibemgbo, Susan Compton, Mallery I Breban, Seth Redmond, Nathan D Grubaugh

Sci Rep· December 2025

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Genomic epidemiology of dengue virus 2 and 3 reveals repeated introductions and exportations of several lineages in Colombia.
Ricardo Rivero, Vaneza Tique-Salleg, Daniel Echeverri-De la Hoz, Lambodhar Damodaran, Daniela Paternina, Nathan D Grubaugh

medRxiv· November 2025

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Heterogeneity in inhibition of genetically diverse dengue virus strains by .
Afeez Sodeinde, Emilie Finch, Ke Li, Mallery I Breban, Ellie Bourgikos, Nathan D Grubaugh

bioRxiv· September 2025

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The impact of orthopoxvirus vaccination and Mpox infection on cross-protective immunity: a multicohort observational study.
Jameson Crandell, Valter Silva Monteiro, Lauren Pischel, Zhenhao Fang, Luciana Conde, Nathan D Grubaugh

Lancet Microbe· July 2025

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Implications of successive blood feeding on Wolbachia-mediated dengue virus inhibition in Aedes aegypti mosquitoes.
Rebecca M Johnson, Mallery I Breban, Braiya L Nolan, Afeez Sodeinde, Isabel M Ott, Nathan D Grubaugh

Nat Commun· July 2025

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Integrated Analysis of the 2022 SARS-CoV-2 Omicron Lineage Replacement Dynamics in Connecticut, US.
Nicholas F G Chen, Kien Pham, Chrispin Chaguza, Rafael Lopes, Fayette Klaassen, Nathan D Grubaugh

Viruses· July 2025

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Utilizing virus genomic surveillance to predict vaccine effectiveness.
Jiye Kwon, Ke Li, Joshua L Warren, Sameer Pandya, Anne M Hahn, Nathan D Grubaugh

medRxiv· June 2025

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Large-Scale Genomic Analysis of SARS-CoV-2 Omicron BA.5 Emergence, United States.
Kien Pham, Chrispin Chaguza, Rafael Lopes, Ted Cohen, Emma Taylor-Salmon, Nathan D Grubaugh

Emerg Infect Dis· May 2025

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Unravelling dengue serotype 3 transmission in Brazil: evidence for multiple introductions of the 3III_B.3.2 lineage.
James Siqueira Pereira, Svetoslav Nanev Slavov, Isabela Carvalho Brcko, Gabriela Ribeiro, Vinicius Carius de Souza, Nathan D Grubaugh

Virus Evol· May 2025

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Different Clinical Severity and Outcomes in a Cohort of Patients With Dengue With Warning Signs in an Endemic Latin American City.
Mara Gómez-Zambrano, Daniela Torres-Hernández, Monica A Murillo-Ortiz, Isabel C Hurtado, Diana M Dávalos, Nathan D Grubaugh

Open Forum Infect Dis· April 2025

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Implications of successive blood feeding on -mediated dengue virus inhibition in mosquitoes.
Rebecca M Johnson, Mallery I Breban, Braiya L Nolan, Afeez Sodeinde, Isabel M Ott, Nathan D Grubaugh

bioRxiv· February 2025

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Tiled Amplicon Sequencing Enables Culture-free Whole-Genome Sequencing of Pathogenic Bacteria From Clinical Specimens.
Chaney C Kalinich, Freddy L Gonzalez, Alice Osmaston, Mallery I Breban, Isabel Distefano, Nathan D Grubaugh

bioRxiv· December 2024

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Dengue Outbreak Caused by Multiple Virus Serotypes and Lineages, Colombia, 2023-2024.
Nathan D Grubaugh, Daniela Torres-Hernández, Mónica A Murillo-Ortiz, Diana M Dávalos, Pio Lopez

Emerg Infect Dis· November 2024

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Analysis of Powassan Virus Genome Sequences from Human Cases Reveals Substantial Genetic Diversity with Implications for Molecular Assay Development.
Erik H Klontz, Navid Chowdhury, Nolan Holbrook, Isaac H Solomon, Sam R Telford, Nathan D Grubaugh

Viruses· October 2024

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A new lineage nomenclature to aid genomic surveillance of dengue virus.
Verity Hill, Sara Cleemput, James Siqueira Pereira, Robert J Gifford, Vagner Fonseca, Nathan D Grubaugh

PLoS Biol· September 2024

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Genome-wide association study between SARS-CoV-2 single nucleotide polymorphisms and virus copies during infections.
Ke Li, Chrispin Chaguza, Julian Stamp, Yi Ting Chew, Nicholas F G Chen, Nathan D Grubaugh

PLoS Comput Biol· September 2024

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SARS-CoV-2-related bat viruses evade human intrinsic immunity but lack efficient transmission capacity.
Mario A Peña-Hernández, Mia Madel Alfajaro, Renata B Filler, Miyu Moriyama, Emma L Keeler, Nathan D Grubaugh

Nat Microbiol· August 2024

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Combining genomic data and infection estimates to characterize the complex dynamics of SARS-CoV-2 Omicron variants in the US.
Rafael Lopes, Kien Pham, Fayette Klaassen, Melanie H Chitwood, Anne M Hahn, Nathan D Grubaugh

Cell Rep· July 2024

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2023-24 dengue outbreak in Valle del Cauca, Colombia caused by multiple virus serotypes and lineages.
Nathan D Grubaugh, Daniela Torres-Hernández, Mónica A Murillo-Ortiz, Diana M Dávalos, Pio Lopez

medRxiv· July 2024

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North-south pathways, emerging variants, and high climate suitability characterize the recent spread of dengue virus serotypes 2 and 3 in the Dominican Republic.
Isaac Miguel, Edwin P Feliz, Robinson Agramonte, Pedro V Martinez, Carlos Vergara, Nathan D Grubaugh

BMC Infect Dis· July 2024

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DengueSeq: a pan-serotype whole genome amplicon sequencing protocol for dengue virus.
Chantal B F Vogels, Verity Hill, Mallery I Breban, Chrispin Chaguza, Lauren M Paul, Nathan D Grubaugh

BMC Genomics· May 2024

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A new lineage nomenclature to aid genomic surveillance of dengue virus.
Verity Hill, Sara Cleemput, Vagner Fonseca, Houriiyah Tegally, Anderson F Brito, Nathan D Grubaugh

medRxiv· May 2024

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