Publications by authors named "Nathan D Hicks"

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Identification of bacterial determinants of tuberculosis infection and treatment outcomes: a phenogenomic analysis of clinical strains.
Sydney Stanley, Caitlin N Spaulding, Qingyun Liu, Michael R Chase, Dang Thi Minh Ha, Nathan D Hicks

Lancet Microbe· June 2024

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Ongoing evolution of the Mycobacterium tuberculosis lactate dehydrogenase reveals the pleiotropic effects of bacterial adaption to host pressure.
Sydney Stanley, Xin Wang, Qingyun Liu, Young Yon Kwon, Abigail M Frey, Nathan D Hicks

PLoS Pathog· February 2024

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Ongoing evolution of the lactate dehydrogenase reveals the pleiotropic effects of bacterial adaption to host pressure.
Sydney Stanley, Xin Wang, Qingyun Liu, Young Yon Kwon, Abigail M Frey, Nathan D Hicks

bioRxiv· October 2023

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High-throughput phenogenotyping clinical strains reveals bacterial determinants of treatment outcomes.
Sydney Stanley, Caitlin N Spaulding, Qingyun Liu, Michael R Chase, Dang Thi Minh Ha, Nathan D Hicks

bioRxiv· April 2023

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Tuberculosis treatment failure associated with evolution of antibiotic resilience.
Qingyun Liu, Junhao Zhu, Charles L Dulberger, Sydney Stanley, Sean Wilson, Nathan D Hicks

Science· December 2022

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Loss of RNase J leads to multi-drug tolerance and accumulation of highly structured mRNA fragments in Mycobacterium tuberculosis.
Maria Carla Martini, Nathan D Hicks, Junpei Xiao, Maria Natalia Alonso, Thibault Barbier

PLoS Pathog· July 2022

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Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics.
Susana Martínez Arbas, Shaman Narayanasamy, Malte Herold, Laura A Lebrun, Michael R Hoopmann, Nathan D Hicks

Nat Microbiol· January 2021

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Mutations in dnaA and a cryptic interaction site increase drug resistance in Mycobacterium tuberculosis.
Nathan D Hicks, Samantha R Giffen, Peter H Culviner, Michael C Chao, Charles L Dulberger

PLoS Pathog· November 2020

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A natural polymorphism of Mycobacterium tuberculosis in the esxH gene disrupts immunodomination by the TB10.4-specific CD8 T cell response.
Rujapak Sutiwisesak, Nathan D Hicks, Shayla Boyce, Kenan C Murphy, Kadamba Papavinasasundaram

PLoS Pathog· October 2020

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Structural and functional insight into the Mycobacterium tuberculosis protein PrpR reveals a novel type of transcription factor.
Su Tang, Nathan D Hicks, Yu-Shan Cheng, Andres Silva, Sarah M Fortune

Nucleic Acids Res· October 2019

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Rifampicin and rifabutin resistance in 1003 Mycobacterium tuberculosis clinical isolates.
Maha R Farhat, Jaimie Sixsmith, Roger Calderon, Nathan D Hicks, Sarah M Fortune

J Antimicrob Chemother· June 2019

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Bacterial Genome-Wide Association Identifies Novel Factors That Contribute to Ethionamide and Prothionamide Susceptibility in Mycobacterium tuberculosis.
Nathan D Hicks, Allison F Carey, Jian Yang, Yanlin Zhao, Sarah M Fortune

mBio· April 2019

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Clinically prevalent mutations in Mycobacterium tuberculosis alter propionate metabolism and mediate multidrug tolerance.
Nathan D Hicks, Jian Yang, Xiaobing Zhang, Bing Zhao, Yonatan H Grad

Nat Microbiol· September 2018

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First draft genome sequence of a strain belonging to the genus and its gene expression in situ.
Emilie E L Muller, Shaman Narayanasamy, Myriam Zeimes, Cédric C Laczny, Laura A Lebrun, Nathan D Hicks

Stand Genomic Sci· October 2017

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More than 50% of Clostridium difficile Isolates from Pet Dogs in Flagstaff, USA, Carry Toxigenic Genotypes.
Nathan E Stone, Lindsay C Sidak-Loftis, Jason W Sahl, Adam J Vazquez, Kristin B Wiggins, Nathan D Hicks

PLoS One· April 2017

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NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats.
Jason W Sahl, Darrin Lemmer, Jason Travis, James M Schupp, John D Gillece, Nathan D Hicks

Microb Genom· August 2016

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Detection of Low-Level Mixed-Population Drug Resistance in Mycobacterium tuberculosis Using High Fidelity Amplicon Sequencing.
Rebecca E Colman, James M Schupp, Nathan D Hicks, David E Smith, Jordan L Buchhagen

PLoS One· February 2016

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Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks.
Hugo Roume, Anna Heintz-Buschart, Emilie E L Muller, Patrick May, Venkata P Satagopam, Nathan D Hicks

NPJ Biofilms Microbiomes· June 2015

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Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage.
Emilie E L Muller, Nicolás Pinel, Cédric C Laczny, Michael R Hoopmann, Shaman Narayanasamy, Nathan D Hicks

Nat Commun· November 2014

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Cryptococcus gattii in North American Pacific Northwest: whole-population genome analysis provides insights into species evolution and dispersal.
David M Engelthaler, Nathan D Hicks, John D Gillece, Chandler C Roe, James M Schupp

mBio· July 2014

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Dynamics of clonal diversity in natural infections of the malaria parasite Plasmodium mexicanum in its free-ranging lizard host.
Nathan D Hicks, Jos J Schall

Parasitol Res· June 2014

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Establishment efficiency among clones of the malaria parasite, Plasmodium mexicanum, for mixed-clone infections in its natural lizard host.
Nathan D Hicks, Jos J Schall

J Parasitol· December 2013

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Evaluation of a BK virus real-time PCR assay designed using novel bioinformatics technology.
Joel A Lefferts, Nathan D Hicks, Gregory J Tsongalis

Exp Mol Pathol· October 2010

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