Publications by authors named "Nathan Springer"

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Conservation and variability of long-range interactions in structurally diverse maize genomes.
Han Liu, Xuxu Ma, Siqi Jiang, Zerui Li, Wei Dai, Nathan M Springer

Nat Commun· November 2025

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DNA demethylase augments RNA-directed DNA methylation by enhancing CLSY gene expression in maize and Arabidopsis.
Qiang Xu, Qiuxin Kan, Zhixiang Luo, Qiang Zhang, Liang Dong, Nathan M Springer

Mol Plant· July 2025

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Designing a nitrogen-efficient cold-tolerant maize for modern agricultural systems.
Jonathan Odilón Ojeda-Rivera, Allison C Barnes, Elizabeth A Ainsworth, Ruthie Angelovici, Bruno Basso, Nathan M Springer

Plant Cell· July 2025

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Transcriptome profiling of maize transcription factor mutants to probe gene regulatory network predictions.
Erika L Ellison, Peng Zhou, Yi-Hsuan Chu, Peter Hermanson, Lina Gomez-Cano, Nathan M Springer

G3 (Bethesda)· January 2025

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Temporally resolved growth patterns reveal novel information about the polygenic nature of complex quantitative traits.
Dorothy D Sweet, Sara B Tirado, Julian Cooper, Nathan M Springer, Cory D Hirsch

Plant J· December 2024

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An epiallele of a gene encoding a PfkB-type carbohydrate kinase affects plant architecture in maize.
Ruonan Li, Yue Xu, Qiang Xu, Jing Tang, Wenqing Chen, Nathan M Springer

Plant Cell· December 2024

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Molecular mechanisms underlying gene regulatory variation of maize metabolic traits.
Yi-Hsuan Chu, Yun Sun Lee, Fabio Gomez-Cano, Lina Gomez-Cano, Peng Zhou, Nathan Springer

Plant Cell· September 2024

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Prioritizing Maize Metabolic Gene Regulators through Multi-Omic Network Integration.
Fabio Gomez-Cano, Jonas Rodriguez, Peng Zhou, Yi-Hsuan Chu, Erika Magnusson, Nathan M Springer

bioRxiv· July 2024

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Editorial overview: Delving into organizational principles of plant genomes.
Hidetoshi Saze, Nathan Springer

Curr Opin Plant Biol· December 2023

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Combined analysis of transposable elements and structural variation in maize genomes reveals genome contraction outpaces expansion.
Manisha Munasinghe, Andrew Read, Michelle C Stitzer, Baoxing Song, Claire C Menard, Nathan Springer

PLoS Genet· December 2023

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Mutator transposon insertions within maize genes often provide a novel outward reading promoter.
Erika L Ellison, Peng Zhou, Peter Hermanson, Yi-Hsuan Chu, Andrew Read, Nathan M Springer

Genetics· November 2023

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Critical role of insertion preference for invasion trajectory of transposons.
Manisha Munasinghe, Nathan Springer, Yaniv Brandvain

Evolution· October 2023

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-Regulatory Elements in Plant Development, Adaptation, and Evolution.
Alexandre P Marand, Andrea L Eveland, Kerstin Kaufmann, Nathan M Springer

Annu Rev Plant Biol· May 2023

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Conserved and variable heat stress responses of the Heat Shock Factor transcription factor family in maize and .
Zachary A Myers, Clair M Wootan, Zhikai Liang, Peng Zhou, Julia Engelhorn, Springer M Nathan

Plant Direct· April 2023

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A novel active transposon creates allelic variation through altered translation rate to influence protein abundance.
Guo Chen, Ruilin Wang, Yizhe Jiang, Xiaoxiao Dong, Jing Xu, Nathan M Springer

Nucleic Acids Res· January 2023

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Mapping responsive genomic elements to heat stress in a maize diversity panel.
Zhikai Liang, Zachary A Myers, Dominic Petrella, Julia Engelhorn, Thomas Hartwig, Nathan M Springer

Genome Biol· November 2022

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Epigenetic features drastically impact CRISPR-Cas9 efficacy in plants.
Trevor Weiss, Peter A Crisp, Krishan M Rai, Meredith Song, Nathan M Springer

Plant Physiol· September 2022

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The maize gene maternal derepression of r1 encodes a DNA glycosylase that demethylates DNA and reduces siRNA expression in the endosperm.
Jonathan I Gent, Kaitlin M Higgins, Kyle W Swentowsky, Fang-Fang Fu, Yibing Zeng, Nathan M Springer

Plant Cell· September 2022

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Modeling chromatin state from sequence across angiosperms using recurrent convolutional neural networks.
Travis Wrightsman, Alexandre P Marand, Peter A Crisp, Nathan M Springer, Edward S Buckler

Plant Genome· September 2022

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Genome-wide loss of CHH methylation with limited transcriptome changes in Setaria viridis DOMAINS REARRANGED METHYLTRANSFERASE (DRM) mutants.
Andrew Read, Trevor Weiss, Peter A Crisp, Zhikai Liang, Jaclyn Noshay, Nathan M Springer

Plant J· July 2022

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DNA demethylation affects imprinted gene expression in maize endosperm.
Qiang Xu, Leiming Wu, Zhixiang Luo, Mei Zhang, Jinsheng Lai, Nathan M Springer

Genome Biol· March 2022

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Prediction of conserved and variable heat and cold stress response in maize using cis-regulatory information.
Peng Zhou, Tara A Enders, Zachary A Myers, Erika Magnusson, Peter A Crisp, Nathan M Springer

Plant Cell· January 2022

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Correction to: Characterizing introgression‑by‑environment interactions using maize near isogenic lines.
Zhi Li, Sara B Tirado, Dnyaneshwar C Kadam, Lisa Coffey, Nathan D Miller, Nathan M Springer

Theor Appl Genet· December 2021

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Plant height heterosis is quantitatively associated with expression levels of plastid ribosomal proteins.
Devon Birdseye, Laura A de Boer, Hua Bai, Peng Zhou, Zhouxin Shen, Nathan M Springer

Proc Natl Acad Sci U S A· November 2021

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Stability of DNA methylation and chromatin accessibility in structurally diverse maize genomes.
Jaclyn M Noshay, Zhikai Liang, Peng Zhou, Peter A Crisp, Alexandre P Marand, Nathan M Springer

G3 (Bethesda)· August 2021

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