Publications by authors named "Nathan Upham"

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Cryptic species and taxonomic revision of kangaroo mice, the rodent genus .
John C Hafner, Nathan S Upham, Fiona Gowen-Huang, Jessica E Light

J Mammal· December 2025

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How many mammal species are there now? Updates and trends in taxonomic, nomenclatural, and geographic knowledge.
Connor J Burgin, Jelle S Zijlstra, Madeleine A Becker, Heru Handika, Jesse M Alston, Nathan S Upham

J Mammal· October 2025

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Extending mammal specimens with their essential phenotypic traits.
Bryan S McLean, David Bloom, Edward B Davis, Robert P Guralnick, Sharlene E Santana, Nathan S Upham

J Mammal· October 2025

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Uncovering historical small mammal biodiversity among the Madrean Sky Islands.
Damien C Rivera, Nathan S Upham

bioRxiv· September 2025

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Anthropocene Imperilment of Ancient Diversity and Evolutionary Potential in Terrestrial Vertebrates.
R Alexander Pyron, Mario R Moura, Rauri C K Bowie, Selma F Brito, Karoline Ceron, Nathan S Upham

Res Sq· September 2025

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A systematic review of the distribution and prevalence of viruses detected in the Peromyscus maniculatus species complex (Rodentia: Cricetidae).
Ally Finkbeiner, Ahmad Khatib, Nathan Upham, Beckett Sterner

PLoS Pathog· June 2025

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How many mammal species are there now? Updates and trends in taxonomic, nomenclatural, and geographic knowledge.
Connor J Burgin, Jelle S Zijlstra, Madeleine A Becker, Heru Handika, Jesse M Alston, Nathan S Upham

bioRxiv· March 2025

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Negative global-scale association between genetic diversity and speciation rates in mammals.
Ana C Afonso Silva, Odile Maliet, Leandro Aristide, David Nogués-Bravo, Nathan Upham

Nat Commun· February 2025

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A Systematic Review of the Distribution and Prevalence of Viruses Detected in the Species Complex (Rodentia: Cricetidae).
Ally Finkbeiner, Ahmad Khatib, Nathan Upham, Beckett Sterner

bioRxiv· December 2024

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Reticulate evolution: Detection and utility in the phylogenomics era.
Saelin Bjornson, Heroen Verbruggen, Nathan S Upham, Jacob L Steenwyk

Mol Phylogenet Evol· December 2024

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A phylogeny-informed characterisation of global tetrapod traits addresses data gaps and biases.
Mario R Moura, Karoline Ceron, Jhonny J M Guedes, Rosana Chen-Zhao, Yanina V Sica, Nathan S Upham

PLoS Biol· July 2024

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Using archived and biocollection samples towards deciphering the DNA virus diversity associated with rodent species in the families cricetidae and heteromyidae.
Michael C Lund, Brendan B Larsen, Dakota M Rowsey, Hans W Otto, Sophie Gryseels, Nathan S Upham

Virology· August 2023

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Genomics expands the mammalverse.
Nathan S Upham, Michael J Landis

Science· April 2023

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Diverse DNA virus genomes identified in fecal samples of Mexican free-tailed bats (Tadarida brasiliensis) captured in Chiricahua Mountains of southeast Arizona (USA).
Ciara Harding, Brendan B Larsen, Hans W Otto, Ahva L Potticary, Simona Kraberger, Nathan S Upham

Virology· March 2023

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The macroevolutionary impact of recent and imminent mammal extinctions on Madagascar.
Nathan M Michielsen, Steven M Goodman, Voahangy Soarimalala, Alexandra A E van der Geer, Liliana M Dávalos, Nathan Upham

Nat Commun· January 2023

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Discovery of three cycloviruses in fecal samples from silver-haired bats (Lasionycteris noctivagans) in Arizona (USA).
Ciara Harding, Brendan B Larsen, Sophie Gryseels, Hans W Otto, Crystal Suazo, Nathan S Upham

Arch Virol· December 2022

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A solution to the challenges of interdisciplinary aggregation and use of specimen-level trait data.
Meghan A Balk, John Deck, Kitty F Emery, Ramona L Walls, Dana Reuter, Nathan S Upham

iScience· October 2022

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Evolutionary causes and consequences of ungulate migration.
Joel O Abraham, Nathan S Upham, Alejandro Damian-Serrano, Brett R Jesmer

Nat Ecol Evol· July 2022

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A global ecological signal of extinction risk in terrestrial vertebrates.
Maya J Munstermann, Noel A Heim, Douglas J McCauley, Jonathan L Payne, Nathan S Upham

Conserv Biol· June 2022

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Expert range maps of global mammal distributions harmonised to three taxonomic authorities.
Charles J Marsh, Yanina V Sica, Connor J Burgin, Wendy A Dorman, Robert C Anderson, Nathan S Upham

J Biogeogr· May 2022

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Evolutionary legacies in contemporary tetrapod imperilment.
Dan A Greenberg, R Alexander Pyron, Liam G W Johnson, Nathan S Upham, Walter Jetz

Ecol Lett· November 2021

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Molecules and fossils tell distinct yet complementary stories of mammal diversification.
Nathan S Upham, Jacob A Esselstyn, Walter Jetz

Curr Biol· October 2021

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Liberating host-virus knowledge from biological dark data.
Nathan S Upham, Jorrit H Poelen, Deborah Paul, Quentin J Groom, Nancy B Simmons

Lancet Planet Health· October 2021

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Holistic understanding of contemporary ecosystems requires integration of data on domesticated, captive and cultivated organisms.
Quentin Groom, Tim Adriaens, Sandro Bertolino, Kendra Phelps, Jorrit H Poelen, Nathan Upham

Biodivers Data J· June 2021

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Where the wild things were: intrinsic and extrinsic extinction predictors in the world's most depleted mammal fauna.
Samuel T Turvey, Clare Duncan, Nathan S Upham, Xavier Harrison, Liliana M Dávalos

Proc Biol Sci· March 2021

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