Publications by authors named "Nathaniel Pope"

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A forest is more than its trees: haplotypes and ancestral recombination graphs.
Halley Fritze, Nathaniel Pope, Jerome Kelleher, Peter Ralph

Genetics· January 2026

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Accessible, Realistic Genome Simulation with Selection Using stdpopsim.
Graham Gower, Nathaniel S Pope, Murillo F Rodrigues, Silas Tittes, Linh N Tran

Mol Biol Evol· October 2025

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Damage processes in extended laser exposures using an model.
Nathaniel J Pope, Jin Ha, Madeline E Melzer, Priscilla Lopez, Amanda Tijerina

Front Ophthalmol (Lausanne)· September 2025

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Accessible, realistic genome simulation with selection using stdpopsim.
Graham Gower, Nathaniel S Pope, Murillo F Rodrigues, Silas Tittes, Linh N Tran

bioRxiv· August 2025

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Shifts in bee diet breadths are associated with gene gains and losses and positive selection across olfactory receptors.
Avehi Singh, Nathaniel S Pope, Margarita M López-Uribe

G3 (Bethesda)· August 2025

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A forest is more than its trees: haplotypes and ancestral recombination graphs.
Halley Fritze, Nathaniel Pope, Jerome Kelleher, Peter Ralph

bioRxiv· July 2025

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Coalescence and Translation: A Language Model for Population Genetics.
Kevin Korfmann, Nathaniel S Pope, Melinda Meleghy, Aurélien Tellier, Andrew D Kern

bioRxiv· June 2025

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Mating frequency estimation and its importance for colony abundance analyses in eusocial pollinators: a case study of Bombus impatiens (Hymenoptera: Apidae).
Sydney A Bird, Nathaniel S Pope, Carley M McGrady, Shelby J Fleischer, Margarita M López-Uribe

J Econ Entomol· October 2024

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Genetic structure and landscape effects on gene flow in the Neotropical lizard Norops brasiliensis (Squamata: Dactyloidae).
Emanuel M Fonseca, Nathaniel S Pope, William E Peterman, Fernanda P Werneck, Guarino R Colli

Heredity (Edinb)· June 2024

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Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations.
M Elise Lauterbur, Maria Izabel A Cavassim, Ariella L Gladstein, Graham Gower, Nathaniel S Pope

Elife· June 2023

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The expansion of agriculture has shaped the recent evolutionary history of a specialized squash pollinator.
Nathaniel S Pope, Avehi Singh, Anna K Childers, Karen M Kapheim, Jay D Evans

Proc Natl Acad Sci U S A· April 2023

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Differential effects of 808-nm light on electron transport chain enzymes in isolated mitochondria: Implications for photobiomodulation initiation.
Nathaniel J Pope, Michael L Denton

Mitochondrion· January 2023

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Fast and accurate estimation of multidimensional site frequency spectra from low-coverage high-throughput sequencing data.
Alex Mas-Sandoval, Nathaniel S Pope, Knud Nor Nielsen, Isin Altinkaya, Matteo Fumagalli

Gigascience· May 2022

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Efficient ancestry and mutation simulation with msprime 1.0.
Franz Baumdicker, Gertjan Bisschop, Daniel Goldstein, Graham Gower, Aaron P Ragsdale, Nathaniel S Pope

Genetics· March 2022

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Mammalian complex III heme dynamics studied with pump-probe spectroscopy and red light illuminations.
Sean P O'Connor, Samantha M Powell, John M Rickman, Nathaniel J Pope, Gary D Noojin

Biomed Opt Express· November 2021

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Transient absorption spectroscopy to explore cellular pathways to photobiomodulation.
Sean P O'Connor, Samantha M Powell, John M Rickman, Nathaniel J Pope, Gary D Noojin

J Photochem Photobiol B· September 2021

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Continuous assessment of metabolic activity of mitochondria using resonance Raman microspectroscopy.
Joshua W Lalonde, Gary D Noojin, Nathaniel J Pope, Samantha M Powell, Vladislav V Yakovlev

J Biophotonics· April 2021

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The use and misuse of regression models in landscape genetic analyses.
William E Peterman, Nathaniel S Pope

Mol Ecol· January 2021

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Wavelength- and irradiance-dependent changes in intracellular nitric oxide level.
Nathaniel J Pope, Samantha M Powell, Jeffrey C Wigle, Michael L Denton

J Biomed Opt· August 2020

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Utilizing field collected insects for next generation sequencing: Effects of sampling, storage, and DNA extraction methods.
Kimberly M Ballare, Nathaniel S Pope, Antonio R Castilla, Sarah Cusser, Richard P Metz

Ecol Evol· December 2019

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Landscape genomics to the rescue of a tropical bee threatened by habitat loss and climate change.
Rodolfo Jaffé, Jamille C Veiga, Nathaniel S Pope, Éder C M Lanes, Carolina S Carvalho

Evol Appl· June 2019

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Sympatric serpentine endemic Monardella (Lamiaceae) species maintain habitat differences despite hybridization.
Kathleen M Kay, Suzie Woolhouse, Brett A Smith, Nathaniel S Pope, Nishanta Rajakaruna

Mol Ecol· May 2018

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Landscape Genomic Conservation Assessment of a Narrow-Endemic and a Widespread Morning Glory From Amazonian Savannas.
Éder C Lanes, Nathaniel S Pope, Ronnie Alves, Nelson M Carvalho Filho, Tereza C Giannini

Front Plant Sci· May 2018

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Seasonal Food Scarcity Prompts Long-Distance Foraging by a Wild Social Bee.
Nathaniel S Pope, Shalene Jha

Am Nat· January 2018

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Adding landscape genetics and individual traits to the ecosystem function paradigm reveals the importance of species functional breadth.
Antonio R Castilla, Nathaniel S Pope, Megan O'Connell, María F Rodriguez, Laurel Treviño

Proc Natl Acad Sci U S A· November 2017

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