Publications by authors named "Neil Bretana"

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Diversity, recombination and misclassification in the family Geminiviridae: Insight from bioinformatics analysis.
Moshood Olamide Lateef, Dauda Nathaniel, Bolaji Osundahunsi, Neil Arvin Bretana

PLoS One· January 2026

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Corrigendum: Preparing correctional settings for the next pandemic: a modeling study of COVID-19 outbreaks in two high-income countries.
Jisoo A Kwon, Neil A Bretaña, Nadine Kronfli, Camille Dussault, Luke Grant

Front Public Health· December 2024

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Controlling COVID-19 outbreaks in the correctional setting: A mathematical modelling study.
Neil Arvin Bretaña, Jisoo A Kwon, Luke Grant, Jennifer Galouzis, Colette McGrath

PLoS One· May 2024

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Preparing correctional settings for the next pandemic: a modeling study of COVID-19 outbreaks in two high-income countries.
Jisoo A Kwon, Neil A Bretaña, Nadine Kronfli, Camille Dussault, Luke Grant

Front Public Health· April 2024

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Combined treatment and prevention strategies for hepatitis C virus elimination in the prisons in New South Wales: a modelling study.
Neil A Bretaña, Richard R Gray, Evan B Cunningham, Brigid Betz-Stablein, Ruy Ribeiro

Addiction· May 2020

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HIV diagnoses in migrant populations in Australia-A changing epidemiology.
Praveena Gunaratnam, Anita Elizabeth Heywood, Skye McGregor, Muhammad Shahid Jamil, Hamish McManus

PLoS One· November 2019

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Aging of the HIV Population in Australia: A Modeling Study.
Neil Arvin Bretaña, Richard Gray, Matthew Law, Rebecca Guy

J Acquir Immune Defic Syndr· December 2018

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Longitudinal injecting risk behaviours among people with a history of injecting drug use in an Australian prison setting: The HITS-p study.
Evan B Cunningham, Behzad Hajarizadeh, Janaki Amin, Neil Bretana, Gregory J Dore

Int J Drug Policy· April 2018

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A two-layered machine learning method to identify protein O-GlcNAcylation sites with O-GlcNAc transferase substrate motifs.
Hui-Ju Kao, Chien-Hsun Huang, Neil Arvin Bretaña, Cheng-Tsung Lu, Kai-Yao Huang

BMC Bioinformatics· July 2016

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Characterization and identification of ubiquitin conjugation sites with E3 ligase recognition specificities.
Van-Nui Nguyen, Kai-Yao Huang, Chien-Hsun Huang, Tzu-Hao Chang, Neil Bretaña

BMC Bioinformatics· May 2015

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Transmission of Hepatitis C Virus among Prisoners, Australia, 2005-2012.
Neil Arvin Bretaña, Lies Boelen, Rowena Bull, Suzy Teutsch, Peter A White

Emerg Infect Dis· May 2015

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A prospective study of hepatitis C incidence in Australian prisoners.
Fabio Luciani, Neil Arvin Bretaña, Suzy Teutsch, Janaki Amin, Libby Topp

Addiction· October 2014

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ViralPhos: incorporating a recursively statistical method to predict phosphorylation sites on virus proteins.
Kai-Yao Huang, Cheng-Tsung Lu, Neil Bretaña, Tzong-Yi Lee, Tzu-Hao Chang

BMC Bioinformatics· April 2014

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DbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications.
Cheng-Tsung Lu, Kai-Yao Huang, Min-Gang Su, Tzong-Yi Lee, Neil Arvin Bretaña

Nucleic Acids Res· January 2013

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Identifying protein phosphorylation sites with kinase substrate specificity on human viruses.
Neil Arvin Bretaña, Cheng-Tsung Lu, Chiu-Yun Chiang, Min-Gang Su, Kai-Yao Huang

PLoS One· November 2012

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Investigation and identification of protein γ-glutamyl carboxylation sites.
Tzong-Yi Lee, Cheng-Tsung Lu, Shu-An Chen, Neil Arvin Bretaña, Tzu-Hsiu Cheng

BMC Bioinformatics· August 2012

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Incorporating evolutionary information and functional domains for identifying RNA splicing factors in humans.
Justin Bo-Kai Hsu, Neil Arvin Bretaña, Tzong-Yi Lee, Hsien-Da Huang

PLoS One· March 2012

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Carboxylator: incorporating solvent-accessible surface area for identifying protein carboxylation sites.
Cheng-Tsung Lu, Shu-An Chen, Neil Arvin Bretaña, Tzu-Hsiu Cheng, Tzong-Yi Lee

J Comput Aided Mol Des· October 2011

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Exploiting maximal dependence decomposition to identify conserved motifs from a group of aligned signal sequences.
Tzong-Yi Lee, Zong-Qing Lin, Sheng-Jen Hsieh, Neil Arvin Bretaña, Cheng-Tsung Lu

Bioinformatics· July 2011

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PlantPhos: using maximal dependence decomposition to identify plant phosphorylation sites with substrate site specificity.
Tzong-Yi Lee, Neil Arvin Bretaña, Cheng-Tsung Lu

BMC Bioinformatics· June 2011

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