Publications by authors named "Neva Caliskan"

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Type I-Fv and engineered type IV-A1 CRISPR-Cas effectors facilitate genome reduction in Escherichia coli.
Nathalie Klein, Mariana Sanchez-Londono, Meral M Kara, José Vicente Gomes-Filho, Samuel Novak, Neva Caliskan

Nucleic Acids Res· November 2025

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Translon: a single term for translated regions.
Michał I Świrski, Jack A S Tierney, M Mar Albà, Dmitry E Andreev, Julie L Aspden, Neva Caliskan

Nat Methods· October 2025

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The translational landscape of HIV-1 infected cells reveals key gene regulatory principles.
Anuja Kibe, Stefan Buck, Anne-Sophie Gribling-Burrer, Orian Gilmer, Patrick Bohn, Neva Caliskan

Nat Struct Mol Biol· May 2025

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Designing the Arginine-Depleting Enzyme for Tumor Targeting.
Alena Maria Wolkersdorfer, Yuri Endo, Josef Kehrein, Maximilian Kappus, Sumitto Hattori, Neva Caliskan

Mol Pharm· March 2025

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AcrVIB1 inhibits CRISPR-Cas13b immunity by promoting unproductive crRNA binding accessible to RNase attack.
Katharina G Wandera, Stefan Schmelz, Angela Migur, Anuja Kibe, Peer Lukat, Neva Caliskan

Mol Cell· March 2025

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Guidelines for minimal reporting requirements, design and interpretation of experiments involving the use of eukaryotic dual gene expression reporters (MINDR).
Gary Loughran, Dmitry E Andreev, Ilya M Terenin, Olivier Namy, Martin Mikl, Neva Caliskan

Nat Struct Mol Biol· March 2025

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Optimization of Structure-Guided Development of Chemical Probes for the Pseudoknot RNA of the Frameshift Element in SARS-CoV-2.
Betül Ceylan, Jennifer Adam, Sabrina Toews, Frank Kaiser, Jonas Dörr, Neva Caliskan

Angew Chem Int Ed Engl· February 2025

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Giant RNA genomes: Roles of host, translation elongation, genome architecture, and proteome in nidoviruses.
Benjamin W Neuman, Alexandria Smart, Orian Gilmer, Redmond P Smyth, Josef Vaas, Neva Caliskan

Proc Natl Acad Sci U S A· February 2025

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Translation Inhibition Mediated by Interferon-Stimulated Genes during Viral Infections.
Alexandria Smart, Orian Gilmer, Neva Caliskan

Viruses· July 2024

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SND1 binds SARS-CoV-2 negative-sense RNA and promotes viral RNA synthesis through NSP9.
Nora Schmidt, Sabina Ganskih, Yuanjie Wei, Alexander Gabel, Sebastian Zielinski, Neva Caliskan

Cell· October 2023

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Mouse Liver-Expressed Shiftless Is an Evolutionarily Conserved Antiviral Effector Restricting Human and Murine Hepaciviruses.
Yudi Zhang, Volker Kinast, Julie Sheldon, Nicola Frericks, Daniel Todt, Neva Caliskan

Microbiol Spectr· August 2023

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Author Correction: Short- and long-range interactions in the HIV-1 5' UTR regulate genome dimerization and packaging.
Liqing Ye, Anne-Sophie Gribling-Burrer, Patrick Bohn, Anuja Kibe, Charlene Börtlein, Neva Caliskan

Nat Struct Mol Biol· March 2023

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Cis-mediated interactions of the SARS-CoV-2 frameshift RNA alter its conformations and affect function.
Lukas Pekarek, Matthias M Zimmer, Anne-Sophie Gribling-Burrer, Stefan Buck, Redmond Smyth, Neva Caliskan

Nucleic Acids Res· January 2023

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POTATO: Automated pipeline for batch analysis of optical tweezers data.
Stefan Buck, Lukas Pekarek, Neva Caliskan

Biophys J· August 2022

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Editorial: mRNA Translational Control as a Mechanism of Post-transcriptional Gene Regulation.
Daniel L Kiss, Deepika Vasudevan, C Kiong Ho, Neva Caliskan

Front Mol Biosci· June 2022

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Spacer prioritization in CRISPR-Cas9 immunity is enabled by the leader RNA.
Chunyu Liao, Sahil Sharma, Sarah L Svensson, Anuja Kibe, Zasha Weinberg, Neva Caliskan

Nat Microbiol· April 2022

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Short- and long-range interactions in the HIV-1 5' UTR regulate genome dimerization and packaging.
Liqing Ye, Anne-Sophie Gribling-Burrer, Patrick Bohn, Anuja Kibe, Charlene Börtlein, Neva Caliskan

Nat Struct Mol Biol· April 2022

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Optical Tweezers to Study RNA-Protein Interactions in Translation Regulation.
Lukas Pekarek, Stefan Buck, Neva Caliskan

J Vis Exp· February 2022

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Thinking Outside the Frame: Impacting Genomes Capacity by Programmed Ribosomal Frameshifting.
Ricarda J Riegger, Neva Caliskan

Front Mol Biosci· February 2022

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Insights from structural studies of the cardiovirus 2A protein.
Neva Caliskan, Chris H Hill

Biosci Rep· January 2022

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Structural and molecular basis for Cardiovirus 2A protein as a viral gene expression switch.
Chris H Hill, Lukas Pekarek, Sawsan Napthine, Anuja Kibe, Andrew E Firth, Neva Caliskan

Nat Commun· December 2021

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The short isoform of the host antiviral protein ZAP acts as an inhibitor of SARS-CoV-2 programmed ribosomal frameshifting.
Matthias M Zimmer, Anuja Kibe, Ulfert Rand, Lukas Pekarek, Liqing Ye, Neva Caliskan

Nat Commun· December 2021

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Investigating molecular mechanisms of 2A-stimulated ribosomal pausing and frameshifting in Theilovirus.
Chris H Hill, Georgia M Cook, Sawsan Napthine, Anuja Kibe, Katherine Brown, Neva Caliskan

Nucleic Acids Res· November 2021

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The SARS-CoV-2 RNA-protein interactome in infected human cells.
Nora Schmidt, Caleb A Lareau, Hasmik Keshishian, Sabina Ganskih, Cornelius Schneider, Neva Caliskan

Nat Microbiol· March 2021

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Thermodynamic control of -1 programmed ribosomal frameshifting.
Lars V Bock, Neva Caliskan, Natalia Korniy, Frank Peske, Marina V Rodnina

Nat Commun· October 2019

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