Publications by authors named "Nicholas Brodie"

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Signal Attrition in Whole Cell Cross-Linking Mass Spectrometry.
Bruno C Amaral, Nicholas I Brodie, Andrew R M Michael, D Alex Crowder, Pauline Douglas

Anal Chem· January 2026

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Click-linking: a cell-compatible protein crosslinking method based on click chemistry.
Bruno C Amaral, Andrew R M Michael, Nicholas I Brodie, D Alex Crowder, Kristen H Eiriksson

Nat Commun· November 2025

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All-in-One Pseudo-MS Method for the Analysis of Gas-Phase Cleavable Protein Crosslinking Reactions.
Nicholas I Brodie, Vladimir Sarpe, D Alex Crowder, David Schriemer

J Am Soc Mass Spectrom· October 2023

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High-Sensitivity Proteome-Scale Searches for Crosslinked Peptides Using CRIMP 2.0.
D Alex Crowder, Vladimir Sarpe, Bruno C Amaral, Nicholas I Brodie, Andrew R M Michael

Anal Chem· April 2023

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Cytoplasmic switch of ARS2 isoforms promotes nonsense-mediated mRNA decay and arsenic sensitivity.
Monica Mesa-Perez, Phineas T Hamilton, Alex Miranda, Nicholas Brodie, Connor O'Sullivan

Nucleic Acids Res· February 2022

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Ligand-induced disorder-to-order transitions characterized by structural proteomics and molecular dynamics simulations.
Karl A T Makepeace, Nicholas I Brodie, Konstantin I Popov, Geoff Gudavicius, Christopher J Nelson

J Proteomics· January 2020

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Conformational ensemble of native α-synuclein in solution as determined by short-distance crosslinking constraint-guided discrete molecular dynamics simulations.
Nicholas I Brodie, Konstantin I Popov, Evgeniy V Petrotchenko, Nikolay V Dokholyan, Christoph H Borchers

PLoS Comput Biol· March 2019

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Top-Down Hydrogen-Deuterium Exchange Analysis of Protein Structures Using Ultraviolet Photodissociation.
Nicholas I Brodie, Romain Huguet, Terry Zhang, Rosa Viner, Vlad Zabrouskov

Anal Chem· March 2018

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Solving protein structures using short-distance cross-linking constraints as a guide for discrete molecular dynamics simulations.
Nicholas I Brodie, Konstantin I Popov, Evgeniy V Petrotchenko, Nikolay V Dokholyan, Christoph H Borchers

Sci Adv· July 2017

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The novel isotopically coded short-range photo-reactive crosslinker 2,4,6-triazido-1,3,5-triazine (TATA) for studying protein structures.
Nicholas I Brodie, Evgeniy V Petrotchenko, Christoph H Borchers

J Proteomics· October 2016

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Isotopically-coded short-range hetero-bifunctional photo-reactive crosslinkers for studying protein structure.
Nicholas I Brodie, Karl A T Makepeace, Evgeniy V Petrotchenko, Christoph H Borchers

J Proteomics· April 2015

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(14)N(15)N DXMSMS Match program for the automated analysis of LC/ESI-MS/MS crosslinking data from experiments using (15)N metabolically labeled proteins.
Evgeniy V Petrotchenko, Jason J Serpa, Karl A T Makepeace, Nicholas I Brodie, Christoph H Borchers

J Proteomics· September 2014

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