Publications by authors named "Nicholas D Sanderson"

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Nanopore adaptive sampling for bacterial identification from periprosthetic joint replacement tissue.
Teresa L Street, Philip Bejon, Laura Leach, Sarah Oakley, Bernadette C Young, Nicholas D Sanderson

Microb Genom· September 2025

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Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny.
Martin Hunt, Angie S Hinrichs, Daniel Anderson, Lily Karim, Bethany L Dearlove, Theo Sanderson, Nicholas D Sanderson

bioRxiv· November 2024

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Species-level, metagenomic and proteomic analysis of microbe-immune interactions in severe asthma.
Maisha F Jabeen, Nicholas D Sanderson, Mariaenrica Tinè, Gillian Donachie, Clair Barber

Allergy· November 2024

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Evaluation of the accuracy of bacterial genome reconstruction with Oxford Nanopore R10.4.1 long-read-only sequencing.
Nicholas D Sanderson, Katie M V Hopkins, Matthew Colpus, Melody Parker, Samuel Lipworth

Microb Genom· May 2024

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Long-read sequencing for fast and robust identification of correct genome-edited alleles: PCR-based and Cas9 capture methods.
Christopher V McCabe, Peter D Price, Gemma F Codner, Alasdair J Allan, Adam Caulder, Nicholas D Sanderson

PLoS Genet· March 2024

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Target enrichment improves culture-independent detection of and antimicrobial resistance determinants direct from clinical samples with Nanopore sequencing.
Teresa L Street, Nicholas D Sanderson, Leanne Barker, James Kavanagh, Kevin Cole

Microb Genom· March 2024

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Erratum: Comparison of R9.4.1/Kit10 and R10/Kit12 Oxford Nanopore flowcells and chemistries in bacterial genome reconstruction.
Nicholas D Sanderson, Natalia Kapel, Gillian Rodger, Hermione Webster, Samuel Lipworth

Microb Genom· November 2023

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Common loss of far-red light photoacclimation in cyanobacteria from hot and cold deserts: a case study in the Chroococcidiopsidales.
Laura A Antonaru, Vera M Selinger, Patrick Jung, Giorgia Di Stefano, Nicholas D Sanderson

ISME Commun· October 2023

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Comparison of R9.4.1/Kit10 and R10/Kit12 Oxford Nanopore flowcells and chemistries in bacterial genome reconstruction.
Nicholas D Sanderson, Natalia Kapel, Gillian Rodger, Hermione Webster, Samuel Lipworth

Microb Genom· January 2023

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Identifying Bacterial Airways Infection in Stable Severe Asthma Using Oxford Nanopore Sequencing Technologies.
Maisha F Jabeen, Nicholas D Sanderson, Dona Foster, Derrick W Crook, Jennifer L Cane

Microbiol Spectr· April 2022

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Clinical Metagenomic Sequencing for Species Identification and Antimicrobial Resistance Prediction in Orthopedic Device Infection.
Teresa L Street, Nicholas D Sanderson, Camille Kolenda, James Kavanagh, Hayleah Pickford

J Clin Microbiol· April 2022

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Metagenomic Sequencing as a Pathogen-Agnostic Clinical Diagnostic Tool for Infectious Diseases: a Systematic Review and Meta-analysis of Diagnostic Test Accuracy Studies.
Kumeren N Govender, Teresa L Street, Nicholas D Sanderson, David W Eyre

J Clin Microbiol· August 2021

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Nanopore metagenomic sequencing of influenza virus directly from respiratory samples: diagnosis, drug resistance and nosocomial transmission, United Kingdom, 2018/19 influenza season.
Yifei Xu, Kuiama Lewandowski, Louise O Downs, James Kavanagh, Thomas Hender, Nicholas D Sanderson

Euro Surveill· July 2021

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The Structure, Evolution, and Gene Expression Within the Caprine Leukocyte Receptor Complex.
John C Schwartz, Nicholas D Sanderson, Derek M Bickhart, Timothy P L Smith, John A Hammond

Front Immunol· October 2020

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DNA Thermo-Protection Facilitates Whole-Genome Sequencing of Mycobacteria Direct from Clinical Samples.
Sophie George, Yifei Xu, Gillian Rodger, Marcus Morgan, Nicholas D Sanderson

J Clin Microbiol· September 2020

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High precision variant and antimicrobial resistance calling from metagenomic Nanopore sequencing.
Nicholas D Sanderson, Jeremy Swann, Leanne Barker, James Kavanagh, Sarah Hoosdally

Genome Res· September 2020

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Nanopore metagenomic sequencing to investigate nosocomial transmission of human metapneumovirus from a unique genetic group among haematology patients in the United Kingdom.
Yifei Xu, Kuiama Lewandowski, Katie Jeffery, Louise O Downs, Dona Foster, Nicholas D Sanderson

J Infect· May 2020

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Two Lineages of with Contrasting Transcription Patterns Have Been Conserved at a Single Locus during Ruminant Speciation.
Mark S Gibson, Alasdair J Allan, Nicholas D Sanderson, James Birch, Simon Gubbins

J Immunol· May 2020

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Optimizing DNA Extraction Methods for Nanopore Sequencing of Neisseria gonorrhoeae Directly from Urine Samples.
Teresa L Street, Leanne Barker, Nicholas D Sanderson, James Kavanagh, Sarah Hoosdally

J Clin Microbiol· February 2020

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Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes.
Nicola De Maio, Liam P Shaw, Alasdair Hubbard, Sophie George, Nicholas D Sanderson

Microb Genom· September 2019

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Panton-Valentine leucocidin is the key determinant of pyomyositis in a bacterial GWAS.
Bernadette C Young, Sarah G Earle, Sona Soeng, Poda Sar, Varun Kumar, Nicholas D Sanderson

Elife· February 2019

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Nomenclature for the KIR of non-human species.
James Robinson, Lisbeth A Guethlein, Giuseppe Maccari, Jeroen Blokhuis, Benjamin N Bimber, Nicholas D Sanderson

Immunogenetics· September 2018

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Real-time analysis of nanopore-based metagenomic sequencing from infected orthopaedic devices.
Nicholas D Sanderson, Teresa L Street, Dona Foster, Jeremy Swann, Bridget L Atkins

BMC Genomics· September 2018

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Gonorrhoea treatment failure caused by a strain with combined ceftriaxone and high-level azithromycin resistance, England, February 2018.
David W Eyre, Nicholas D Sanderson, Emily Lord, Natasha Regisford-Reimmer, Kevin Chau

Euro Surveill· July 2018

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Molecular Diagnosis of Orthopedic-Device-Related Infection Directly from Sonication Fluid by Metagenomic Sequencing.
Teresa L Street, Nicholas D Sanderson, Bridget L Atkins, Andrew J Brent, Kevin Cole

J Clin Microbiol· August 2017

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