Publications by authors named "Nick Loman"

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An optimized toolkit for high-molecular-weight DNA extraction and ultra-long-read nanopore sequencing using glass beads and hexamminecobalt(III) chloride.
Inswasti Cahyani, John Tyson, Nadine Holmes, Josh Quick, Chris Moore, Nick Loman

Genome Res· May 2025

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A phylogenetics and variant calling pipeline to support SARS-CoV-2 genomic epidemiology in the UK.
Rachel Colquhoun, Áine O'Toole, Verity Hill, J T McCrone, Xiaoyu Yu, Nick Loman

Virus Evol· October 2024

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Genomics-informed outbreak investigations of SARS-CoV-2 using civet.
Áine O'Toole, Verity Hill, Ben Jackson, Rebecca Dewar, Nikita Sahadeo, Nick Loman

PLOS Glob Public Health· December 2022

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Observations of SARS-CoV-2 variant of concern B.1.1.7 at the UK's largest hospital trust.
Mark I Garvey, Claire McMurray, Anna L Casey, Liz Ratcliffe, Joanne Stockton, Nick J Loman

J Infect· October 2021

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Genomic sequencing of SARS-CoV-2 in Rwanda reveals the importance of incoming travelers on lineage diversity.
Yvan Butera, Enatha Mukantwari, Maria Artesi, Jeanne d'arc Umuringa, Áine Niamh O'Toole, Nick Loman

Nat Commun· September 2021

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Details of SARS-CoV-2 reinfections at a major UK tertiary centre.
Mark I Garvey, Anna L Casey, Martyn A C Wilkinson, Liz Ratcliffe, Claire McMurray, Nick J Loman

J Infect· June 2021

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Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil.
Nuno R Faria, Thomas A Mellan, Charles Whittaker, Ingra M Claro, Darlan da S Candido, Nick J Loman

Science· May 2021

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Genomics and epidemiology of a novel SARS-CoV-2 lineage in Manaus, Brazil.
Nuno R Faria, Thomas A Mellan, Charles Whittaker, Ingra M Claro, Darlan da S Candido, Nick J Loman

medRxiv· March 2021

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Evolution and epidemic spread of SARS-CoV-2 in Brazil.
Darlan S Candido, Ingra M Claro, Jaqueline G de Jesus, William M Souza, Filipe R R Moreira, Nick J Loman

Science· September 2020

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Identification of Common Deletions in the Spike Protein of Severe Acute Respiratory Syndrome Coronavirus 2.
Zhe Liu, Huanying Zheng, Huifang Lin, Mingyue Li, Runyu Yuan, Nick Loman

J Virol· August 2020

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Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 - 2018.
Sarah C Hill, Renato de Souza, Julien Thézé, Ingra Claro, Renato S Aguiar, Nick Loman

PLoS Pathog· August 2020

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Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China.
Jing Lu, Louis du Plessis, Zhe Liu, Verity Hill, Min Kang, Nick Loman

Cell· May 2020

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Field investigation with real-time virus genetic characterisation support of a cluster of Ebola virus disease cases in Dubréka, Guinea, April to June 2015.
Alessandro Pini, Delayo Zomahoun, Sophie Duraffour, Tarik Derrough, Myrna Charles, Nick Loman

Euro Surveill· March 2018

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The distinct features of microbial 'dysbiosis' of Crohn's disease do not occur to the same extent in their unaffected, genetically-linked kindred.
Umer Zeeshan Ijaz, Christopher Quince, Laura Hanske, Nick Loman, Szymon T Calus

PLoS One· August 2017

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The effect of DNA extraction methodology on gut microbiota research applications.
Konstantinos Gerasimidis, Martin Bertz, Christopher Quince, Katja Brunner, Alanna Bruce, Nick Loman

BMC Res Notes· July 2016

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A disruptive sequencer meets disruptive publishing.
Nick Loman, Sarah Goodwin, Hans Jansen, Matt Loose

F1000Res· March 2016

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Voices of biotech.
Ido Amit, David Baker, Roger Barker, Bonnie Berger, Carolyn Bertozzi, Nick Loman

Nat Biotechnol· March 2016

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Extensive Modulation of the Fecal Metagenome in Children With Crohn's Disease During Exclusive Enteral Nutrition.
Christopher Quince, Umer Zeeshan Ijaz, Nick Loman, A Murat Eren, Delphine Saulnier

Am J Gastroenterol· December 2015

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Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium.
Luca Freschi, Julie Jeukens, Irena Kukavica-Ibrulj, Brian Boyle, Marie-Josée Dupont, Nick Loman

Front Microbiol· October 2015

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Parallel evolutionary pathways to antibiotic resistance selected by biocide exposure.
Mark A Webber, Rebekah N Whitehead, Manuella Mount, Nick J Loman, Mark J Pallen

J Antimicrob Chemother· August 2015

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A cross-sectional survey of bacterial species in plaque from client owned dogs with healthy gingiva, gingivitis or mild periodontitis.
Ian J Davis, Corrin Wallis, Oliver Deusch, Alison Colyer, Lisa Milella, Nick Loman

PLoS One· March 2015

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Pseudomonas aeruginosa adaptation in the nasopharyngeal reservoir leads to migration and persistence in the lungs.
Joanne L Fothergill, Daniel R Neill, Nick Loman, Craig Winstanley, Aras Kadioglu

Nat Commun· September 2014

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Role of Faecalibacterium prausnitzii in Crohn's Disease: friend, foe, or does not really matter?
Konstantinos Gerasimidis, Richard Russell, Richard Hansen, Christopher Quince, Nick Loman

Inflamm Bowel Dis· July 2014

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Extreme genetic fragility of the HIV-1 capsid.
Suzannah J Rihn, Sam J Wilson, Nick J Loman, Mudathir Alim, Saskia E Bakker

PLoS Pathog· January 2014

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So you want to be a computational biologist?
Nick Loman, Mick Watson

Nat Biotechnol· November 2013

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