Publications by authors named "Nigel Collier"

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Generative language models exhibit social identity biases.
Tiancheng Hu, Yara Kyrychenko, Steve Rathje, Nigel Collier, Sander van der Linden

Nat Comput Sci· January 2025

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Semantic Speech Networks Linked to Formal Thought Disorder in Early Psychosis.
Caroline R Nettekoven, Kelly Diederen, Oscar Giles, Helen Duncan, Iain Stenson, Nigel Collier

Schizophr Bull· March 2023

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A survey on clinical natural language processing in the United Kingdom from 2007 to 2022.
Honghan Wu, Minhong Wang, Jinge Wu, Farah Francis, Yun-Hsuan Chang, Nigel Collier

NPJ Digit Med· December 2022

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BioCaster in 2021: automatic disease outbreaks detection from global news media.
Zaiqiao Meng, Anya Okhmatovskaia, Maxime Polleri, Yannan Shen, Guido Powell, Nigel Collier

Bioinformatics· September 2022

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Exploiting document graphs for inter sentence relation extraction.
Hoang-Quynh Le, Duy-Cat Can, Nigel Collier

J Biomed Semantics· June 2022

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A Conceptual Framework for Representing Events Under Public Health Surveillance.
Anya Okhmatovskaia, Yannan Shen, Iris Ganser, Nigel Collier, Nicholas B King

Stud Health Technol Inform· May 2022

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PheneBank: a literature-based database of phenotypes.
Mohammad Taher Pilehvar, Adam Bernard, Damian Smedley, Nigel Collier

Bioinformatics· January 2022

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Editor's introduction to the special issue of the 6th Biomedical Linked Annotation Hackathon (BLAH6).
Jin-Dong Kim, Kevin Bretonnel Cohen, Fabio Rinaldi, Zhiyong Lu, Nigel Collier

Genomics Inform· June 2020

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A pragmatic guide to geoparsing evaluation: Toponyms, Named Entity Recognition and pragmatics.
Milan Gritta, Mohammad Taher Pilehvar, Nigel Collier

Lang Resour Eval· September 2019

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Introduction to BLAH5 special issue: recent progress on interoperability of biomedical text mining.
Jin-Dong Kim, Kevin Bretonnel Cohen, Nigel Collier, Zhiyong Lu, Fabio Rinaldi

Genomics Inform· June 2019

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TwiMed: Twitter and PubMed Comparable Corpus of Drugs, Diseases, Symptoms, and Their Relations.
Nestor Alvaro, Yusuke Miyao, Nigel Collier

JMIR Public Health Surveill· May 2017

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What's missing in geographical parsing?
Milan Gritta, Mohammad Taher Pilehvar, Nut Limsopatham, Nigel Collier

Lang Resour Eval· March 2017

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Thematic issue of the Second combined Bio-ontologies and Phenotypes Workshop.
Karin Verspoor, Anika Oellrich, Nigel Collier, Tudor Groza, Philippe Rocca-Serra

J Biomed Semantics· December 2016

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The digital revolution in phenotyping.
Anika Oellrich, Nigel Collier, Tudor Groza, Dietrich Rebholz-Schuhmann, Nigam Shah

Brief Bioinform· September 2016

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Special issue on bio-ontologies and phenotypes.
Larisa N Soldatova, Nigel Collier, Anika Oellrich, Tudor Groza, Karin Verspoor

J Biomed Semantics· September 2016

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Erratum: Sieve-based coreference resolution enhances semi-supervised learning model for chemical-induced disease relation extraction.
Hoang-Quynh Le, Mai-Vu Tran, Thanh Hai Dang, Quang-Thuy Ha, Nigel Collier

Database (Oxford)· September 2016

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PhenoMiner: from text to a database of phenotypes associated with OMIM diseases.
Nigel Collier, Tudor Groza, Damian Smedley, Peter N Robinson, Anika Oellrich

Database (Oxford)· August 2016

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Sieve-based coreference resolution enhances semi-supervised learning model for chemical-induced disease relation extraction.
Hoang-Quynh Le, Mai-Vu Tran, Thanh Hai Dang, Quang-Thuy Ha, Nigel Collier

Database (Oxford)· July 2016

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Generation of silver standard concept annotations from biomedical texts with special relevance to phenotypes.
Anika Oellrich, Nigel Collier, Damian Smedley, Tudor Groza

PLoS One· January 2016

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Crowdsourcing Twitter annotations to identify first-hand experiences of prescription drug use.
Nestor Alvaro, Mike Conway, Son Doan, Christoph Lofi, John Overington, Nigel Collier

J Biomed Inform· December 2015

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Automatic concept recognition using the human phenotype ontology reference and test suite corpora.
Tudor Groza, Sebastian Köhler, Sandra Doelken, Nigel Collier, Anika Oellrich

Database (Oxford)· September 2015

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Concept selection for phenotypes and diseases using learn to rank.
Nigel Collier, Anika Oellrich, Tudor Groza

J Biomed Semantics· June 2015

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Toward knowledge support for analysis and interpretation of complex traits.
Nigel Collier, Anika Oellrich, Tudor Groza

Genome Biol· January 2015

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Factors influencing performance of internet-based biosurveillance systems used in epidemic intelligence for early detection of infectious diseases outbreaks.
Philippe Barboza, Laetitia Vaillant, Yann Le Strat, David M Hartley, Noele P Nelson, Nigel Collier

PLoS One· January 2015

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Learning to recognize phenotype candidates in the auto-immune literature using SVM re-ranking.
Nigel Collier, Mai-vu Tran, Hoang-quynh Le, Quang-Thuy Ha, Anika Oellrich

PLoS One· June 2014

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