Publications by authors named "Niko Pinter"

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Proteomic characterization of the pseudocapsule of clear cell renal cell carcinoma in VHL disease reveals a distinct microenvironment at the tumor boundary zone.
Tobias Feilen, Manuel Rogg, Grigor Andreev, Niko Pinter, Maximilian Wess

Neoplasia· October 2025

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Signatures of the Systemic Effects of a Snake Venom and Antivenom: Multiomics Profiling of the Kidney Pathology.
Alison F A Chaves, Bianca C S C de Barros, Miguel Cosenza-Contreras, Mariana S L C Morone, Ana T A Sachetto, Niko Pinter

Mol Cell Proteomics· August 2025

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Proteomic analysis of non-muscle invasive and muscle invasive bladder cancer highlights distinct subgroups with metabolic, matrisomal, and immune hallmarks and emphasizes importance of the stromal compartment.
Thien-Ly Julia Dinh, Manuel Rogg, Miguel Cosenza-Contreras, Mujia Li, Max Zirngibl, Niko Pinter

J Pathol· January 2025

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TermineR: Extracting information on endogenous proteolytic processing from shotgun proteomics data.
Miguel Cosenza-Contreras, Adrianna Seredynska, Daniel Vogele, Niko Pinter, Eva Brombacher

Proteomics· October 2024

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Proteometabolomics of initial and recurrent glioblastoma highlights an increased immune cell signature with altered lipid metabolism.
Miguel Cosenza-Contreras, Agnes Schäfer, Justin Sing, Lena Cook, Maren N Stillger, Niko Pinter

Neuro Oncol· March 2024

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Systemic toxicity of snake venom metalloproteinases: Multi-omics analyses of kidney and blood plasma disturbances in a mouse model.
Dilza Trevisan-Silva, Miguel Cosenza-Contreras, Ursula C Oliveira, Nancy da Rós, Débora Andrade-Silva, Niko Pinter

Int J Biol Macromol· December 2023

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Targeted and explorative profiling of kallikrein proteases and global proteome biology of pancreatic ductal adenocarcinoma, chronic pancreatitis, and normal pancreas highlights disease-specific proteome remodelling.
Janina Werner, Patrick Bernhard, Miguel Cosenza-Contreras, Niko Pinter, Matthias Fahrner

Neoplasia· February 2023

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MaxQuant and MSstats in Galaxy Enable Reproducible Cloud-Based Analysis of Quantitative Proteomics Experiments for Everyone.
Niko Pinter, Damian Glätzer, Matthias Fahrner, Klemens Fröhlich, James Johnson

J Proteome Res· June 2022

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Benchmarking of analysis strategies for data-independent acquisition proteomics using a large-scale dataset comprising inter-patient heterogeneity.
Klemens Fröhlich, Eva Brombacher, Matthias Fahrner, Daniel Vogele, Lucas Kook, Niko Pinter

Nat Commun· May 2022

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The Nma1 protein promotes long distance transport mediated by early endosomes in Ustilago maydis.
Karina Schneider, Theresa Farr, Niko Pinter, Kerstin Schmitt, Oliver Valerius

Mol Microbiol· February 2022

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Signal peptide peptidase activity connects the unfolded protein response to plant defense suppression by Ustilago maydis.
Niko Pinter, Christina Andrea Hach, Martin Hampel, Dmitrij Rekhter, Krzysztof Zienkiewicz

PLoS Pathog· April 2019

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