Publications by authors named "Nikolay A Krylov"

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Structural mechanism of human oncochannel TRPV6 inhibition by the natural phytoestrogen genistein.
Arthur Neuberger, Yury A Trofimov, Maria V Yelshanskaya, Kirill D Nadezhdin, Nikolay A Krylov, Roman G Efremov, Alexander I Sobolevsky

Nat Commun· May 2023

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Immune antibodies recognizing the stem region of SARS-CoV-2 spike protein: Molecular modeling and in vitro study of synthetic peptides presentation to the antibodies.
Elena T Aliper, Ivan M Ryzhov, Polina S Obukhova, Alexander B Tuzikov, Oxana E Galanina, Nikolay A Krylov

Biochim Biophys Acta Biomembr· January 2026

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Structure-function analyses of human TRPV6 ancestral and derived haplotypes.
Arthur Neuberger, Alexey Shalygin, Yury A Trofimov, Irina I Veretenenko, Kirill D Nadezhdin, Nikolay A Krylov

Structure· January 2025

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Membrane-Active Singlet Oxygen Photogenerators as a Paradigm for Broad-Spectrum Antivirals: The Case of Halogenated (BOron)-DIPYrromethenes.
Xenia A Maryewski, Maxim S Krasilnikov, Petra Straková, Jiří Holoubek, Tereza Frčková, Nikolay A Krylov

ACS Appl Mater Interfaces· January 2025

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Nanoscale lipid domains determine the dynamic molecular portraits of mixed DOPC/DOPS bilayers in a fluid phase: A computational insight.
Irina I Veretenenko, Yury A Trofimov, Nikolay A Krylov, Roman G Efremov

Biochim Biophys Acta Biomembr· October 2024

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Dynamic molecular portraits of ion-conducting pores characterize functional states of TRPV channels.
Yury A Trofimov, Nikolay A Krylov, Alexander S Minakov, Kirill D Nadezhdin, Arthur Neuberger

Commun Chem· June 2024

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The scorpion toxin BeKm-1 blocks hERG cardiac potassium channels using an indispensable arginine residue.
Iana I Zavarzina, Alexey I Kuzmenkov, Nikita A Dobrokhotov, Ekaterina E Maleeva, Yuliya V Korolkova, Nikolay A Krylov

FEBS Lett· April 2024

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Structural Analysis and Activity Correlation of Amphiphilic Cyclic Antimicrobial Peptides Derived from the [WR] Scaffold.
Shaima A El-Mowafi, Anastasia G Konshina, Eman H M Mohammed, Nikolay A Krylov, Roman G Efremov

Molecules· December 2023

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Kalium 3.0 is a comprehensive depository of natural, artificial, and labeled polypeptides acting on potassium channels.
Nikolay A Krylov, Valentin M Tabakmakher, Daria A Yureva, Alexander A Vassilevski, Alexey I Kuzmenkov

Protein Sci· November 2023

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Molecular pathway and structural mechanism of human oncochannel TRPV6 inhibition by the phytocannabinoid tetrahydrocannabivarin.
Arthur Neuberger, Yury A Trofimov, Maria V Yelshanskaya, Jeffrey Khau, Kirill D Nadezhdin, Nikolay A Krylov

Nat Commun· August 2023

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The Mechanism of Selective Recognition of Lipid Substrate by hDHHC20 Enzyme.
Irina S Panina, Nikolay A Krylov, Anton O Chugunov, Roman G Efremov, Larisa V Kordyukova

Int J Mol Sci· November 2022

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A Uniquely Stable Trimeric Model of SARS-CoV-2 Spike Transmembrane Domain.
Elena T Aliper, Nikolay A Krylov, Dmitry E Nolde, Anton A Polyansky, Roman G Efremov

Int J Mol Sci· August 2022

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Structural mechanism of heat-induced opening of a temperature-sensitive TRP channel.
Kirill D Nadezhdin, Arthur Neuberger, Yuri A Trofimov, Nikolay A Krylov, Viktor Sinica

Nat Struct Mol Biol· July 2021

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Potassium channel blocker crafted by α-hairpinin scaffold engineering.
Valentin M Tabakmakher, Andrei M Gigolaev, Steve Peigneur, Nikolay A Krylov, Jan Tytgat

Biophys J· June 2021

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libxtc: an efficient library for reading XTC-compressed MD trajectory data.
Nikolay A Krylov, Roman G Efremov

BMC Res Notes· April 2021

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Phospholipase A2 way to hydrolysis: Dint formation, hydrophobic mismatch, and lipid exclusion.
Anna S Alekseeva, Pavel E Volynsky, Nikolay A Krylov, Valery P Chernikov, Elena L Vodovozova

Biochim Biophys Acta Biomembr· January 2021

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Protein surface topography as a tool to enhance the selective activity of a potassium channel blocker.
Antonina A Berkut, Anton O Chugunov, Konstantin S Mineev, Steve Peigneur, Valentin M Tabakmakher, Nikolay A Krylov

J Biol Chem· November 2019

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Confined Dynamics of Water in Transmembrane Pore of TRPV1 Ion Channel.
Yury A Trofimov, Nikolay A Krylov, Roman G Efremov

Int J Mol Sci· September 2019

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Kalium 2.0, a comprehensive database of polypeptide ligands of potassium channels.
Valentin M Tabakmakher, Nikolay A Krylov, Alexey I Kuzmenkov, Roman G Efremov, Alexander A Vassilevski

Sci Data· May 2019

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Cardiotoxins: Functional Role of Local Conformational Changes.
Anastasia G Konshina, Nikolay A Krylov, Roman G Efremov

J Chem Inf Model· November 2017

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Kalium: a database of potassium channel toxins from scorpion venom.
Alexey I Kuzmenkov, Nikolay A Krylov, Anton O Chugunov, Eugene V Grishin, Alexander A Vassilevski

Database (Oxford)· January 2017

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Temperature-sensitive gating of TRPV1 channel as probed by atomistic simulations of its trans- and juxtamembrane domains.
Anton O Chugunov, Pavel E Volynsky, Nikolay A Krylov, Dmitry E Nolde, Roman G Efremov

Sci Rep· September 2016

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Liquid but durable: molecular dynamics simulations explain the unique properties of archaeal-like membranes.
Anton O Chugunov, Pavel E Volynsky, Nikolay A Krylov, Ivan A Boldyrev, Roman G Efremov

Sci Rep· December 2014

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PREDDIMER: a web server for prediction of transmembrane helical dimers.
Anton A Polyansky, Anton O Chugunov, Pavel E Volynsky, Nikolay A Krylov, Dmitry E Nolde

Bioinformatics· March 2014

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Nontrivial behavior of water in the vicinity and inside lipid bilayers as probed by molecular dynamics simulations.
Nikolay A Krylov, Vladimir M Pentkovsky, Roman G Efremov

ACS Nano· October 2013

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