Publications by authors named "Nimisha Ghosh"

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Unveiling Epigenetic Regulatory Elements Associated with Breast Cancer Development.
Marta Jardanowska-Kotuniak, Michał Dramiński, Michal Wlasnowolski, Marcin Łapiński, Kaustav Sengupta, Nimisha Ghosh

Int J Mol Sci· July 2025

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A review on the applications of Transformer-based language models for nucleotide sequence analysis.
Nimisha Ghosh, Daniele Santoni, Indrajit Saha, Giovanni Felici

Comput Struct Biotechnol J· March 2025

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Unveiling epigenetic regulatory elements associated with breast cancer development.
Marta Jardanowska-Kotuniak, Michał Dramiński, Michał Własnowolski, Marcin Łapiński, Kaustav Sengupta, Nimisha Ghosh

bioRxiv· November 2024

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Predicting Transcription Factor Binding Sites with Deep Learning.
Nimisha Ghosh, Daniele Santoni, Indrajit Saha, Giovanni Felici

Int J Mol Sci· May 2024

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Editorial: Unveiling novel aspects of SARS-CoV-2 to combat COVID-19.
Nimisha Ghosh, Indrajit Saha, Dariusz Plewczynski

Front Genet· February 2024

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Transcription Factor Driven Gene Regulation in COVID-19 Patients.
Daniele Santoni, Nimisha Ghosh, Carlo Derelitto, Indrajit Saha

Viruses· May 2023

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Interactome-Based Machine Learning Predicts Potential Therapeutics for COVID-19.
Nimisha Ghosh, Indrajit Saha, Anna Gambin

ACS Omega· April 2023

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Unveiling the Biomarkers of Cancer and COVID-19 and Their Regulations in Different Organs by Integrating RNA-Seq Expression and Protein-Protein Interactions.
Nimisha Ghosh, Indrajit Saha, Dariusz Plewczynski

ACS Omega· December 2022

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Identification of Human miRNA Biomarkers Targeting the SARS-CoV-2 Genome.
Indrajit Saha, Nimisha Ghosh, Dariusz Plewczynski

ACS Omega· December 2022

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Bioinformatics pipeline unveils genetic variability to synthetic vaccine design for Indian SARS-CoV-2 genomes.
Nimisha Ghosh, Indrajit Saha, Nikhil Sharma, Suman Nandi

Int Immunopharmacol· November 2022

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Editorial: SARS-CoV-2: From Genetic Variability to Vaccine Design.
Indrajit Saha, Nimisha Ghosh, Dariusz Plewczynski

Front Genet· August 2022

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Characterisation of SARS-CoV-2 clades based on signature SNPs unveils continuous evolution.
Nimisha Ghosh, Indrajit Saha, Suman Nandi, Nikhil Sharma

Methods· July 2022

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Online Predictor Using Machine Learning to Predict Novel Coronavirus and Other Pathogenic Viruses.
Jnanendra Prasad Sarkar, Indrajit Saha, Nimisha Ghosh, Debasree Maity, Dariusz Plewczynski

ACS Omega· July 2022

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Human miRNAs to Identify Potential Regions of SARS-CoV-2.
Nimisha Ghosh, Indrajit Saha, Nikhil Sharma, Jnanendra Prasad Sarkar

ACS Omega· June 2022

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Palindromic target site identification in SARS-CoV-2, MERS-CoV and SARS-CoV-1 by adopting CRISPR-Cas technique.
Nimisha Ghosh, Indrajit Saha, Nikhil Sharma

Gene· April 2022

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A review on evolution of emerging SARS-CoV-2 variants based on spike glycoprotein.
Nimisha Ghosh, Suman Nandi, Indrajit Saha

Int Immunopharmacol· April 2022

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Phylogenetic analysis of 17271 Indian SARS-CoV-2 genomes to identify temporal and spatial hotspot mutations.
Nimisha Ghosh, Suman Nandi, Indrajit Saha

PLoS One· March 2022

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An entropy-based study on mutational trajectory of SARS-CoV-2 in India.
Daniele Santoni, Nimisha Ghosh, Indrajit Saha

Infect Genet Evol· January 2022

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Interactome of human and SARS-CoV-2 proteins to identify human hub proteins associated with comorbidities.
Nimisha Ghosh, Indrajit Saha, Nikhil Sharma

Comput Biol Med· November 2021

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Hotspot Mutations in SARS-CoV-2.
Indrajit Saha, Nimisha Ghosh, Nikhil Sharma, Suman Nandi

Front Genet· November 2021

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Immunogenicity and antigenicity based T-cell and B-cell epitopes identification from conserved regions of 10664 SARS-CoV-2 genomes.
Nimisha Ghosh, Nikhil Sharma, Indrajit Saha

Infect Genet Evol· August 2021

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Strategies for COVID-19 Epidemiological Surveillance in India: Overall Policies Till June 2021.
Nimisha Ghosh, Indrajit Saha, Jnanendra Prasad Sarkar, Ujjwal Maulik

Front Public Health· August 2021

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Genome-wide analysis of 10664 SARS-CoV-2 genomes to identify virus strains in 73 countries based on single nucleotide polymorphism.
Nimisha Ghosh, Indrajit Saha, Nikhil Sharma, Suman Nandi, Dariusz Plewczynski

Virus Res· June 2021

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Whole genome analysis of more than 10 000 SARS-CoV-2 virus unveils global genetic diversity and target region of NSP6.
Indrajit Saha, Nimisha Ghosh, Ayan Pradhan, Nikhil Sharma, Debasree Maity

Brief Bioinform· March 2021

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COVID-DeepPredictor: Recurrent Neural Network to Predict SARS-CoV-2 and Other Pathogenic Viruses.
Indrajit Saha, Nimisha Ghosh, Debasree Maity, Arjit Seal, Dariusz Plewczynski

Front Genet· February 2021

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