Publications by authors named "Nitin Baliga"

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Host oxidative stress primes mycobacteria for rapid antibiotic resistance evolution.
Nitin Baliga, Evan Pepper-Tunick, Vivek Srinivas, Fred Mast, Song Li

Res Sq· December 2025

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Host oxidative stress primes mycobacteria for rapid antibiotic resistance evolution.
Evan Pepper-Tunick, Vivek Srinivas, Fred D Mast, Song Li, Sagan Russ, Nitin S Baliga

bioRxiv· November 2025

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Personalized Clostridioides difficile colonization risk prediction and probiotic therapy assessment in the human gut.
Alex V Carr, Nitin S Baliga, Christian Diener, Sean M Gibbons

Cell Syst· August 2025

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Individualized dynamic risk assessment and treatment selection for multiple myeloma.
Carl Murie, Serdar Turkarslan, Anoop P Patel, David G Coffey, Pamela S Becker, Nitin S Baliga

Br J Cancer· June 2025

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Alternative splicing in a coral during heat stress acclimation and recovery.
Nitin Baliga, Kathryn Stankiewicz, Jacob Valenzuela, Serdar Turkarslan, Wei-Ju Wu

Res Sq· April 2025

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3D Hydrogel Culture System Recapitulates Key Tuberculosis Phenotypes and Demonstrates Pyrazinamide Efficacy.
Vishal K Gupta, Vijaya V Vaishnavi, Mario L Arrieta-Ortiz, Abhirami P S, Jyothsna K M, Nitin S Baliga

Adv Healthc Mater· February 2025

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Emergence and disruption of cooperativity in a denitrifying microbial community.
Alex V Carr, Anne E Otwell, Kristopher A Hunt, Yan Chen, James Wilson, Nitin S Baliga

ISME J· January 2025

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Origin of biogeographically distinct ecotypes during laboratory evolution.
Jacob J Valenzuela, Selva Rupa Christinal Immanuel, James Wilson, Serdar Turkarslan, Maryann Ruiz, Nitin S Baliga

Nat Commun· August 2024

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Gene regulatory network topology governs resistance and treatment escape in glioma stem-like cells.
James H Park, Parvinder Hothi, Adrian Lopez Garcia de Lomana, Min Pan, Rachel Calder, Nitin S Baliga

Sci Adv· June 2024

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Comparison of the transcriptome, lipidome, and c-di-GMP production between BCGΔBCG1419c and BCG, with Mincle- and Myd88-dependent induction of proinflammatory cytokines in murine macrophages.
Mario Alberto Flores-Valdez, Eliza J R Peterson, Michel de Jesús Aceves-Sánchez, Nitin S Baliga, Yasu S Morita

Sci Rep· May 2024

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Contribution of Microorganisms with the Clade II Nitrous Oxide Reductase to Suppression of Surface Emissions of Nitrous Oxide.
Kristopher A Hunt, Alex V Carr, Anne E Otwell, Jacob J Valenzuela, Kathleen S Walker, Nitin S Baliga

Environ Sci Technol· April 2024

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An atlas of causal and mechanistic drivers of interpatient heterogeneity in glioma.
Serdar Turkarslan, Yu He, Parvinder Hothi, Carl Murie, Abran Nicolas, Nitin S Baliga

medRxiv· April 2024

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Individualized dynamic risk assessment for multiple myeloma.
Carl Murie, Serdar Turkarslan, Anoop Patel, David G Coffey, Pamela S Becker, Nitin S Baliga

medRxiv· April 2024

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Consequential insights for advancing informal STEM learning and outcomes for students from historically marginalized communities.
Claudia McLaughlin Ludwig, Rebecca A Howsmon, Shelley Stromholt, Jacob J Valenzuela, Rachel Calder, Nitin S Baliga

Humanit Soc Sci Commun· March 2024

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Gene regulatory network topology governs resistance and treatment escape in glioma stem-like cells.
James H Park, Parvinder Hothi, Adrian Lopez Garcia de Lomana, Min Pan, Rachel Calder, Nitin S Baliga

bioRxiv· February 2024

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Personalized engraftment risk prediction and probiotic therapy assessment in the human gut.
Alex Carr, Nitin S Baliga, Christian Diener, Sean M Gibbons

bioRxiv· January 2024

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Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle.
Yaxi Wang, Larry A Gallagher, Pia A Andrade, Andi Liu, Ian R Humphreys, Nitin S Baliga

Cell· October 2023

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A comprehensive spectral assay library to quantify the Halobacterium salinarum NRC-1 proteome by DIA/SWATH-MS.
Ulrike Kusebauch, Alan P R Lorenzetti, David S Campbell, Min Pan, David Shteynberg, Nitin S Baliga

Sci Data· October 2023

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Growth phase estimation for abundant bacterial populations sampled longitudinally from human stool metagenomes.
Joe J Lim, Christian Diener, James Wilson, Jacob J Valenzuela, Nitin S Baliga

Nat Commun· September 2023

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Discovery of a glutathione utilization pathway in Francisella that shows functional divergence between environmental and pathogenic species.
Yaxi Wang, Hannah E Ledvina, Catherine A Tower, Stanimir Kambarev, Elizabeth Liu, Nitin S Baliga

Cell Host Microbe· August 2023

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MtrA modulates Mycobacterium tuberculosis cell division in host microenvironments to mediate intrinsic resistance and drug tolerance.
Eliza J R Peterson, Aaron N Brooks, David J Reiss, Amardeep Kaur, Julie Do, Nitin S Baliga

Cell Rep· August 2023

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Genetic manipulation of candidate phyla radiation bacteria provides functional insights into microbial dark matter.
Yaxi Wang, Larry A Gallagher, Pia A Andrade, Andi Liu, Ian R Humphreys, Nitin S Baliga

bioRxiv· May 2023

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A Genome-Scale Atlas Reveals Complex Interplay of Transcription and Translation in an Archaeon.
Alan P R Lorenzetti, Ulrike Kusebauch, Lívia S Zaramela, Wei-Ju Wu, João P P de Almeida, Nitin S Baliga

mSystems· April 2023

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Disrupting the ArcA Regulatory Network Amplifies the Fitness Cost of Tetracycline Resistance in Escherichia coli.
Mario L Arrieta-Ortiz, Min Pan, Amardeep Kaur, Evan Pepper-Tunick, Vivek Srinivas, Nitin S Baliga

mSystems· February 2023

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A single-cell based precision medicine approach using glioblastoma patient-specific models.
James H Park, Abdullah H Feroze, Samuel N Emerson, Anca B Mihalas, C Dirk Keene, Nitin S Baliga

NPJ Precis Oncol· August 2022

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