Publications by authors named "Obi Griffith"

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ImmunoNX: a robust bioinformatics workflow to support personalized neoantigen vaccine trials.
Kartik Singhal, Evelyn Schmidt, Susanna Kiwala, S Peter Goedegebuure, Christopher A Miller, Obi L Griffith, Malachi Griffith

ArXiv· December 2025

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CeRTS: certainty retrieval token search in large language model clinical information extraction.
Lars E Schimmelpfennig, Kriti Bhattarai, Inez Y Oh, Jake Lever, Obi L Griffith, Malachi Griffith

J Biomed Inform· October 2025

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CIViC MCP: Integrating Large Language Models with the Clinical Interpretations of Variants in Cancer.
Lars Schimmelpfennig, Quentin Cody, Joshua McMichael, Adam C Coffman, Jason Saliba, Malachi Griffith, Obi L Griffith

bioRxiv· October 2025

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Clonal dynamics of monozygotic twinning in early human embryogenesis.
Christopher Jongsoo Yoon, Chang Hyun Nam, Seung Mi Lee, Eun Saem Choi, Ji Hye Bae, Obi L Griffith, Malachi Griffith

bioRxiv· October 2025

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Evaluating Language Models for Biomedical Fact-Checking: A Benchmark Dataset for Cancer Variant Interpretation Verification.
Caralyn Reisle, Cameron J Grisdale, Kilannin Krysiak, Arpad M Danos, Mariam Khanfar, Malachi Griffith, Obi L Griffith

bioRxiv· September 2025

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Large B cell lymphoma microenvironment archetype profiles.
Xubin Li, Kartik Singhal, Qing Deng, Dai Chihara, David Russler-Germain, Obi L Griffith, Malachi Griffith

Cancer Cell· July 2025

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Looking Forward to AI and Medicine: Where Are We, and Where Are We Going?
Adam Wilcox, Malachi Griffith, Obi Griffith

Mo Med· May 2025

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Identifying genetic errors of immunity due to mosaicism.
Elizabeth G Schmitz, Malachi Griffith, Obi L Griffith, Megan A Cooper

J Exp Med· May 2025

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Single-Cell Transcriptomic Analysis of Kaposi Sarcoma.
Daniel A Rauch, Paula Valiño Ramos, Mariam Khanfar, John Harding, Ancy Joseph, Obi Griffith, Malachi Griffith

PLoS Pathog· April 2025

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The Hao-Fountain syndrome protein USP7 regulates neuronal connectivity in the brain via a novel p53-independent ubiquitin signaling pathway.
Hao Chen, Cole J Ferguson, Dylan C Mitchell, Isabel Risch, Amanda Titus, Obi L Griffith, Malachi Griffith

Cell Rep· February 2025

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Genomic Data and Privacy.
Candace T Myers, Runjun D Kumar, Lisa Pilgram, Luca Bonomi, Mara Thomas, Obi L Griffith

Clin Chem· January 2025

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Neoantigen DNA vaccines are safe, feasible, and induce neoantigen-specific immune responses in triple-negative breast cancer patients.
Xiuli Zhang, S Peter Goedegebuure, Michael Y Chen, Rashmi Mishra, Felicia Zhang, Obi Griffith, Malachi Griffith

Genome Med· November 2024

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pVACview: an interactive visualization tool for efficient neoantigen prioritization and selection.
Huiming Xia, My H Hoang, Evelyn Schmidt, Susanna Kiwala, Joshua McMichael, Obi L Griffith, Malachi Griffith

Genome Med· November 2024

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A New Era of Data-Driven Cancer Research and Care: Opportunities and Challenges.
Felicia Gomez, Arpad M Danos, Guilherme Del Fiol, Anant Madabhushi, Pallavi Tiwari, Malachi Griffith, Obi L Griffith

Cancer Discov· October 2024

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Neoantigen landscape supports feasibility of personalized cancer vaccine for follicular lymphoma.
Cody A Ramirez, Michelle Becker-Hapak, Kartik Singhal, David A Russler-Germain, Felix Frenkel, Malachi Griffith, Obi L Griffith

Blood Adv· August 2024

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Whole-genome sequences reveal zygotic composition in chimeric twins.
Christopher J Yoon, Chang Hyun Nam, Taewoo Kim, Jeong Seok Lee, Ryul Kim, Obi L Griffith, Malachi Griffith

HGG Adv· July 2024

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Cytokines drive the formation of memory-like NK cell subsets via epigenetic rewiring and transcriptional regulation.
Jennifer A Foltz, Jennifer Tran, Pamela Wong, Changxu Fan, Evelyn Schmidt, Obi L Griffith, Malachi Griffith

Sci Immunol· June 2024

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pVACview: an interactive visualization tool for efficient neoantigen prioritization and selection.
Huiming Xia, My Hoang, Evelyn Schmidt, Susanna Kiwala, Joshua McMichael, Obi L Griffith, Malachi Griffith

ArXiv· June 2024

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Single-cell T-cell receptor repertoire profiling in dogs.
My H Hoang, Zachary L Skidmore, Hans Rindt, Shirley Chu, Bryan Fisk, Malachi Griffith, Obi L Griffith

Commun Biol· April 2024

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GAiN: An integrative tool utilizing generative adversarial neural networks for augmented gene expression analysis.
Michael R Waters, Matthew Inkman, Kay Jayachandran, Roman M Kowalchuk, Clifford Robinson, Obi L Griffith

Patterns (N Y)· February 2024

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DGIdb 5.0: rebuilding the drug-gene interaction database for precision medicine and drug discovery platforms.
Matthew Cannon, James Stevenson, Kathryn Stahl, Rohit Basu, Adam Coffman, Obi L Griffith, Malachi Griffith

Nucleic Acids Res· January 2024

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Normalization of drug and therapeutic concepts with Thera-Py.
Matthew Cannon, James Stevenson, Kori Kuzma, Susanna Kiwala, Jeremy L Warner, Obi L Griffith, Malachi Griffith

JAMIA Open· December 2023

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Ultra-Deep Sequencing Reveals the Mutational Landscape of Classical Hodgkin Lymphoma.
Felicia Gomez, Bryan Fisk, Joshua F McMichael, Matthew Mosior, Jennifer A Foltz, Malachi Griffith, Obi L Griffith

Cancer Res Commun· November 2023

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Endothelial cells are a key target of IFN-g during response to combined PD-1/CTLA-4 ICB treatment in a mouse model of bladder cancer.
Sharon L Freshour, Timothy H-P Chen, Bryan Fisk, Haolin Shen, Matthew Mosior, Obi L Griffith, Malachi Griffith

iScience· October 2023

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Donor-Derived Follicular Lymphoma After Kidney Transplantation: A Case Report.
Kartik Singhal, Marcus P Watkins, Todd A Fehniger, Malachi Griffith, Obi L Griffith

JCO Precis Oncol· September 2023

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