Publications by authors named "Oliver Crook"

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Semi-supervised Bayesian integration of multiple spatial proteomics datasets.
Stephen Coleman, Lisa Breckels, Ross F Waller, Kathryn S Lilley, Chris Wallace, Oliver M Crook

PLoS Comput Biol· December 2025

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Inferring residue level hydrogen deuterium exchange with ReX.
Oliver M Crook, Nathan Gittens, Chun-Wa Chung, Charlotte M Deane

Commun Chem· November 2025

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An updated Bioconductor workflow for correlation profiling subcellular proteomics.
Charlotte Hutchings, Thomas Krueger, Oliver M Crook, Laurent Gatto, Kathryn S Lilley

F1000Res· September 2025

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msqrob2TMT: Robust Linear Mixed Models for Inferring Differential Abundant Proteins in Labeled Experiments With Arbitrarily Complex Design.
Stijn Vandenbulcke, Christophe Vanderaa, Oliver Crook, Lennart Martens, Lieven Clement

Mol Cell Proteomics· July 2025

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Global Proteomics Indicates Subcellular-Specific Anti-Ferroptotic Responses to Ionizing Radiation.
Josie A Christopher, Lisa M Breckels, Oliver M Crook, Mercedes Vazquez-Chantada, Derek Barratt

Mol Cell Proteomics· January 2025

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Comprehensive Overview of Bottom-Up Proteomics Using Mass Spectrometry.
Yuming Jiang, Devasahayam Arokia Balaya Rex, Dina Schuster, Benjamin A Neely, Germán L Rosano, Oliver M Crook

ACS Meas Sci Au· August 2024

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System-wide analysis of RNA and protein subcellular localization dynamics.
Eneko Villanueva, Tom Smith, Mariavittoria Pizzinga, Mohamed Elzek, Rayner M L Queiroz, Oliver M Crook

Nat Methods· January 2024

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Comprehensive Overview of Bottom-Up Proteomics using Mass Spectrometry.
Yuming Jiang, Devasahayam Arokia Balaya Rex, Dina Schuster, Benjamin A Neely, Germán L Rosano, Oliver M Crook

ArXiv· November 2023

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A Functional Bayesian Model for Hydrogen-Deuterium Exchange Mass Spectrometry.
Oliver M Crook, Nathan Gittens, Chun-Wa Chung, Charlotte M Deane

J Proteome Res· September 2023

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Mapping diversity in African trypanosomes using high resolution spatial proteomics.
Nicola M Moloney, Konstantin Barylyuk, Eelco Tromer, Oliver M Crook, Lisa M Breckels

Nat Commun· July 2023

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Cryptosporidium uses multiple distinct secretory organelles to interact with and modify its host cell.
Amandine Guérin, Katherine M Strelau, Konstantin Barylyuk, Bethan A Wallbank, Laurence Berry, Oliver M Crook

Cell Host Microbe· April 2023

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Semi-Supervised Non-Parametric Bayesian Modelling of Spatial Proteomics.
Oliver M Crook, Kathryn S Lilley, Laurent Gatto, Paul D W Kirk

Ann Appl Stat· December 2022

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Analysis of the first genetic engineering attribution challenge.
Oliver M Crook, Kelsey Lane Warmbrod, Greg Lipstein, Christine Chung, Christopher W Bakerlee

Nat Commun· November 2022

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Inferring differential subcellular localisation in comparative spatial proteomics using BANDLE.
Oliver M Crook, Colin T R Davies, Lisa M Breckels, Josie A Christopher, Laurent Gatto

Nat Commun· October 2022

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Empirical Bayes functional models for hydrogen deuterium exchange mass spectrometry.
Oliver M Crook, Chun-Wa Chung, Charlotte M Deane

Commun Biol· June 2022

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Prior Signal Acquisition Software Versions for Orbitrap Underestimate Low Isobaric Mass Tag Intensities, Without Detriment to Differential Abundance Experiments.
Tom S Smith, Anna Andrejeva, Josie Christopher, Oliver M Crook, Mohamed Elzek

ACS Meas Sci Au· June 2022

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CFTR Rescue by Lumacaftor (VX-809) Induces an Extensive Reorganization of Mitochondria in the Cystic Fibrosis Bronchial Epithelium.
Clarissa Braccia, Josie A Christopher, Oliver M Crook, Lisa M Breckels, Rayner M L Queiroz

Cells· June 2022

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Challenges and Opportunities for Bayesian Statistics in Proteomics.
Oliver M Crook, Chun-Wa Chung, Charlotte M Deane

J Proteome Res· April 2022

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Improving lab-of-origin prediction of genetically engineered plasmids via deep metric learning.
Igor M Soares, Fernando H F Camargo, Adriano Marques, Oliver M Crook

Nat Comput Sci· April 2022

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Spatiotemporal proteomic profiling of the pro-inflammatory response to lipopolysaccharide in the THP-1 human leukaemia cell line.
Claire M Mulvey, Lisa M Breckels, Oliver M Crook, David J Sanders, Andre L R Ribeiro

Nat Commun· October 2021

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A Bayesian semi-parametric model for thermal proteome profiling.
Siqi Fang, Paul D W Kirk, Marcus Bantscheff, Kathryn S Lilley, Oliver M Crook

Commun Biol· June 2021

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Moving Profiling Spatial Proteomics Beyond Discrete Classification.
Oliver M Crook, Tom Smith, Mohamed Elzek, Kathryn S Lilley

Proteomics· December 2020

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A Comprehensive Subcellular Atlas of the Toxoplasma Proteome via hyperLOPIT Provides Spatial Context for Protein Functions.
Konstantin Barylyuk, Ludek Koreny, Huiling Ke, Simon Butterworth, Oliver M Crook

Cell Host Microbe· November 2020

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A semi-supervised Bayesian approach for simultaneous protein sub-cellular localisation assignment and novelty detection.
Oliver M Crook, Aikaterini Geladaki, Daniel J H Nightingale, Owen L Vennard, Kathryn S Lilley

PLoS Comput Biol· November 2020

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Spatial proteomics defines the content of trafficking vesicles captured by golgin tethers.
John J H Shin, Oliver M Crook, Alicia C Borgeaud, Jérôme Cattin-Ortolá, Sew Y Peak-Chew

Nat Commun· November 2020

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