Publications by authors named "Oliver Rinner"

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Novel proteomics biomarkers of recurrent pregnancy loss reflect the dysregulation of immune interactions at the maternal-fetal interface.
Eszter Tóth, Máté Posta, Dániel Györffy, Orsolya Oravecz, Emese Farkas, Oliver Rinner

Front Immunol· September 2025

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A machine learning-based chemoproteomic approach to identify drug targets and binding sites in complex proteomes.
Ilaria Piazza, Nigel Beaton, Roland Bruderer, Thomas Knobloch, Crystel Barbisan, Oliver Rinner

Nat Commun· August 2020

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Analysis of 1508 Plasma Samples by Capillary-Flow Data-Independent Acquisition Profiles Proteomics of Weight Loss and Maintenance.
Roland Bruderer, Jan Muntel, Sebastian Müller, Oliver M Bernhardt, Tejas Gandhi, Oliver Rinner

Mol Cell Proteomics· June 2019

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Next-generation Proteomics from an Industrial Perspective.
Oliver Rinner

Chimia (Aarau)· December 2016

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Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome.
Ulrike Kusebauch, David S Campbell, Eric W Deutsch, Caroline S Chu, Douglas A Spicer, Oliver Rinner

Cell· July 2016

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A Combined Shotgun and Targeted Mass Spectrometry Strategy for Breast Cancer Biomarker Discovery.
Martin Sjöström, Reto Ossola, Thomas Breslin, Oliver Rinner, Lars Malmström

J Proteome Res· July 2015

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Extending the limits of quantitative proteome profiling with data-independent acquisition and application to acetaminophen-treated three-dimensional liver microtissues.
Roland Bruderer, Oliver M Bernhardt, Tejas Gandhi, Saša M Miladinović, Lin-Yang Cheng, Oliver Rinner

Mol Cell Proteomics· May 2015

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DIGESTIF: a universal quality standard for the control of bottom-up proteomics experiments.
Dorothée Lebert, Mathilde Louwagie, Sandra Goetze, Guillaume Picard, Reto Ossola, Oliver Rinner

J Proteome Res· February 2015

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Cell type-specific nuclear pores: a case in point for context-dependent stoichiometry of molecular machines.
Alessandro Ori, Niccolò Banterle, Murat Iskar, Amparo Andrés-Pons, Claudia Escher, Oliver Rinner

Mol Syst Biol· September 2013

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N-glycoprotein SRMAtlas: a resource of mass spectrometric assays for N-glycosites enabling consistent and multiplexed protein quantification for clinical applications.
Ruth Hüttenhain, Silvia Surinova, Reto Ossola, Zhi Sun, David Campbell, Oliver Rinner

Mol Cell Proteomics· April 2013

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A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis.
Paola Picotti, Mathieu Clément-Ziza, Henry Lam, David S Campbell, Alexander Schmidt, Oliver Rinner

Nature· February 2013

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Reproducible quantification of cancer-associated proteins in body fluids using targeted proteomics.
Ruth Hüttenhain, Martin Soste, Nathalie Selevsek, Hannes Röst, Atul Sethi, Oliver Rinner

Sci Transl Med· July 2012

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Using iRT, a normalized retention time for more targeted measurement of peptides.
Claudia Escher, Lukas Reiter, Brendan MacLean, Reto Ossola, Franz Herzog, Oliver Rinner

Proteomics· April 2012

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Modularity and hormone sensitivity of the Drosophila melanogaster insulin receptor/target of rapamycin interaction proteome.
Timo Glatter, Ralf B Schittenhelm, Oliver Rinner, Katarzyna Roguska, Alexander Wepf

Mol Syst Biol· November 2011

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The quantitative proteome of a human cell line.
Martin Beck, Alexander Schmidt, Johan Malmstroem, Manfred Claassen, Alessandro Ori, Oliver Rinner

Mol Syst Biol· November 2011

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Biomarker validation in blood specimens by selected reaction monitoring mass spectrometry of N-glycosites.
Reto Ossola, Ralph Schiess, Paola Picotti, Oliver Rinner, Lukas Reiter

Methods Mol Biol· July 2011

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The oxygen sensor PHD3 limits glycolysis under hypoxia via direct binding to pyruvate kinase.
Nan Chen, Oliver Rinner, Dominika Czernik, Katarzyna J Nytko, Dan Zheng

Cell Res· June 2011

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mProphet: automated data processing and statistical validation for large-scale SRM experiments.
Lukas Reiter, Oliver Rinner, Paola Picotti, Ruth Hüttenhain, Martin Beck

Nat Methods· May 2011

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Probing native protein structures by chemical cross-linking, mass spectrometry, and bioinformatics.
Alexander Leitner, Thomas Walzthoeni, Abdullah Kahraman, Franz Herzog, Oliver Rinner

Mol Cell Proteomics· August 2010

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Combined functional genomic and proteomic approaches identify a PP2A complex as a negative regulator of Hippo signaling.
Paulo S Ribeiro, Filipe Josué, Alexander Wepf, Michael C Wehr, Oliver Rinner

Mol Cell· August 2010

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High-throughput generation of selected reaction-monitoring assays for proteins and proteomes.
Paola Picotti, Oliver Rinner, Robert Stallmach, Franziska Dautel, Terry Farrah

Nat Methods· January 2010

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Identification of cross-linked peptides from large sequence databases.
Oliver Rinner, Jan Seebacher, Thomas Walzthoeni, Lukas N Mueller, Martin Beck

Nat Methods· April 2008

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Quantitative proteomic analysis of protein complexes: concurrent identification of interactors and their state of phosphorylation.
Delphine Pflieger, Martin A Jünger, Markus Müller, Oliver Rinner, Hookeun Lee

Mol Cell Proteomics· February 2008

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The zebrafish mutant lbk/vam6 resembles human multisystemic disorders caused by aberrant trafficking of endosomal vesicles.
Helia B Schonthaler, Valerie C Fleisch, Oliver Biehlmaier, Yuri Makhankov, Oliver Rinner

Development· January 2008

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PhosphoPep--a phosphoproteome resource for systems biology research in Drosophila Kc167 cells.
Bernd Bodenmiller, Johan Malmstrom, Bertran Gerrits, David Campbell, Henry Lam, Oliver Rinner

Mol Syst Biol· November 2007

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