Publications by authors named "Omar Abudayyeh"

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Precise kilobase-scale genomic insertions in mammalian cells using PASTE.
Christopher W Fell, Cian Schmitt-Ulms, Dario V Tagliaferri, Jonathan S Gootenberg, Omar O Abudayyeh

Nat Protoc· June 2025

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Reprogramming site-specific retrotransposon activity to new DNA sites.
Christopher W Fell, Lukas Villiger, Justin Lim, Masahiro Hiraizumi, Dario Tagliaferri, Omar O Abudayyeh

Nature· June 2025

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Invigorating discovery and clinical translation of aging biomarkers.
Erik Jacques, Chiara Herzog, Kejun Ying, Alan Tomusiak, Jessica Kasamoto, Omar O Abudayyeh

Nat Aging· April 2025

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Fanzors, a family of eukaryotic RNA-guided DNA endonucleases.
Kaiyi Jiang, Jonathan S Gootenberg, Omar O Abudayyeh

FEBS Lett· April 2025

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Rapid in silico directed evolution by a protein language model with EVOLVEpro.
Kaiyi Jiang, Zhaoqing Yan, Matteo Di Bernardo, Samantha R Sgrizzi, Lukas Villiger, Omar O Abudayyeh

Science· January 2025

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CRISPR-based rapid molecular diagnostic tests for fusion-driven leukemias.
Rahul S Vedula, Hannah Q Karp, Jeremy Koob, Felicia Lim, Jacqueline S Garcia, Omar Abudayyeh

Blood· September 2024

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Programmable biology through artificial intelligence: from nucleic acids to proteins to cells.
Omar O Abudayyeh, Jonathan S Gootenberg

Nat Methods· August 2024

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Rapid protein evolution by few-shot learning with a protein language model.
Kaiyi Jiang, Zhaoqing Yan, Matteo Di Bernardo, Samantha R Sgrizzi, Lukas Villiger, Omar O Abudayyeh

bioRxiv· July 2024

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CRISPR technologies for genome, epigenome and transcriptome editing.
Lukas Villiger, Julia Joung, Luke Koblan, Jonathan Weissman, Omar O Abudayyeh

Nat Rev Mol Cell Biol· June 2024

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A transcription factor atlas of directed differentiation.
Julia Joung, Sai Ma, Tristan Tay, Kathryn R Geiger-Schuller, Paul C Kirchgatterer, Omar O Abudayyeh

Cell· June 2024

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Author Correction: CRISPR technologies for genome, epigenome and transcriptome editing.
Lukas Villiger, Julia Joung, Luke Koblan, Jonathan Weissman, Omar O Abudayyeh

Nat Rev Mol Cell Biol· June 2024

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Programmable RNA writing with trans-splicing.
Cian Schmitt-Ulms, Alisan Kayabolen, Marcos Manero-Carranza, Nathan Zhou, Keira Donnelly, Omar O Abudayyeh

bioRxiv· February 2024

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Discovery of Diverse CRISPR-Cas Systems and Expansion of the Genome Engineering Toolbox.
Eugene V Koonin, Jonathan S Gootenberg, Omar O Abudayyeh

Biochemistry· December 2023

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Programmable RNA-guided DNA endonucleases are widespread in eukaryotes and their viruses.
Kaiyi Jiang, Justin Lim, Samantha Sgrizzi, Michael Trinh, Alisan Kayabolen, Omar O Abudayyeh

Sci Adv· September 2023

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Programmable RNA-guided endonucleases are widespread in eukaryotes and their viruses.
Kaiyi Jiang, Justin Lim, Samantha Sgrizzi, Michael Trinh, Alisan Kayabolen, Omar O Abudayyeh

bioRxiv· June 2023

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Programmable eukaryotic protein synthesis with RNA sensors by harnessing ADAR.
Kaiyi Jiang, Jeremy Koob, Xi Dawn Chen, Rohan N Krajeski, Yifan Zhang, Omar O Abudayyeh

Nat Biotechnol· May 2023

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A Multiplexed Cas13-Based Assay with Point-of-Care Attributes for Simultaneous COVID-19 Diagnosis and Variant Surveillance.
Maturada Patchsung, Aimorn Homchan, Kanokpol Aphicho, Surased Suraritdechachai, Thanyapat Wanitchanon, Omar Abudayyeh

CRISPR J· April 2023

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Drag-and-drop genome insertion of large sequences without double-strand DNA cleavage using CRISPR-directed integrases.
Matthew T N Yarnall, Eleonora I Ioannidi, Cian Schmitt-Ulms, Rohan N Krajeski, Justin Lim, Omar O Abudayyeh

Nat Biotechnol· April 2023

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A transcription factor atlas of directed differentiation.
Julia Joung, Sai Ma, Tristan Tay, Kathryn R Geiger-Schuller, Paul C Kirchgatterer, Omar O Abudayyeh

Cell· January 2023

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RNA-activated protein cleavage with a CRISPR-associated endopeptidase.
Jonathan Strecker, F Esra Demircioglu, David Li, Guilhem Faure, Max E Wilkinson, Omar O Abudayyeh

Science· November 2022

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RNA-triggered protein cleavage and cell growth arrest by the type III-E CRISPR nuclease-protease.
Kazuki Kato, Sae Okazaki, Cian Schmitt-Ulms, Kaiyi Jiang, Wenyuan Zhou, Omar O Abudayyeh

Science· November 2022

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Author Correction: Programmable RNA targeting with the single-protein CRISPR effector Cas7-11.
Ahsen Özcan, Rohan Krajeski, Eleonora Ioannidi, Brennan Lee, Apolonia Gardner, Omar O Abudayyeh

Nature· August 2022

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What are the current bottlenecks in developing and applying CRISPR technologies?
Elizabeth H Kellogg, Jonathan Gootenberg, Omar Abudayyeh, Alan S L Wong, James E Dahlman

Cell Syst· August 2022

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Structure and engineering of the type III-E CRISPR-Cas7-11 effector complex.
Kazuki Kato, Wenyuan Zhou, Sae Okazaki, Yukari Isayama, Tomohiro Nishizawa, Omar O Abudayyeh

Cell· June 2022

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Programmable RNA targeting with the single-protein CRISPR effector Cas7-11.
Ahsen Özcan, Rohan Krajeski, Eleonora Ioannidi, Brennan Lee, Apolonia Gardner, Omar O Abudayyeh

Nature· September 2021

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