Publications by authors named "Oommen Mathew"

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CNN-BLSTM based deep learning framework for eukaryotic kinome classification: An explainability based approach.
Chinju John, Jayakrushna Sahoo, Irish K Sajan, Manu Madhavan, Oommen K Mathew

Comput Biol Chem· October 2024

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Use of near infrared spectroscopy for the prediction of perioperative complications in patients undergoing elective microsurgical resection of cerebral arteriovenous malformations- a prospective observational trial (NIRSCAM trial).
Jithumol Thankam Thomas, Ajay Prasad Hrishi P, Ranganatha Praveen, Manikandan Sethuraman, Unnikrishnan Prathapadas, Oommen Mathew

J Clin Monit Comput· June 2024

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Effect of titanium dioxide nanocoating on the colour stability of room temperature vulcanizing maxillofacial silicone-an invitro study.
Gopika K K, Harsha Kumar K, R Ravichandran, Prasanth V, Kala S, Oommen P Mathew

Clin Oral Investig· December 2023

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The sequence and de novo assembly of the genome of the Indian oil sardine, Sardinella longiceps.
Sandhya Sukumaran, Wilson Sebastian, A Gopalakrishnan, Oommen K Mathew, V G Vysakh

Sci Data· August 2023

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Evaluation and correlation of nociceptive response index and spectral entropy indices as monitors of nociception in anesthetized patients.
Neeraja Ajayan, Ajay Prasad Hrishi, Oommen Mathew, Gourinandan Saravanan

J Neurosci Rural Pract· May 2023

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A Perfusion Index-Based Evaluation and Comparison of Peripheral Perfusion in Sevoflurane and Isoflurane Anaesthesia: A Prospective Randomised Controlled Trial.
Neeraja Ajayan, Jayakumar Christudas, Linette Morris, Oommen Mathew, Ajay Prasad Hrishi

Turk J Anaesthesiol Reanim· April 2023

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Near-chromosomal de novo assembly of Bengal tiger genome reveals genetic hallmarks of apex predation.
Harsh Shukla, Kushal Suryamohan, Anubhab Khan, Krishna Mohan, Rajadurai C Perumal, Oommen K Mathew

Gigascience· December 2022

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Drug-food Interactions in the Era of Molecular Big Data, Machine Intelligence, and Personalized Health.
Romy Roy, Shamsudheen Marakkar, Munawar Peringadi Vayalil, Alisha Shahanaz, Athira Panicker Anil, Oommen Kaleeckal Mathew

Recent Adv Food Nutr Agric· November 2022

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PASS2.7: a database containing structure-based sequence alignments and associated features of protein domain superfamilies from SCOPe.
Teerna Bhattacharyya, Soumya Nayak, Smit Goswami, Vasundhara Gadiyaram, Oommen K Mathew

Database (Oxford)· April 2022

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Comparison of multiple risk scores in assessing medium-to long-term clinical outcomes in unstable angina / non-ST-elevation myocardial infarction patients undergoing multi vessel percutaneous coronary intervention: An observational, registry-based study in India.
Gailin Sebastian, Vivek Pillai, Ashraf Manzil, Ramakrishna Damodara, Ish Kalra, Oommen Mathew

Indian Heart J· November 2021

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Bleeding complications after dual antiplatelet therapy with ticagrelor versus dual antiplatelet therapy with clopidogrel-a propensity-matched comparative study of two antiplatelet regimes in off-pump coronary artery bypass grafting.
Praveen Kerala Varma, Hisham Ahmed, Neethu Krishna, Rajesh Jose, Kirun Gopal, Oommen Plavannal Mathew

Indian J Thorac Cardiovasc Surg· January 2021

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Phenotypic expression and clinical outcomes in a South Asian PRKAG2 cardiomyopathy cohort.
Hisham Ahamed, Aniketh Vijay Balegadde, Shilpa Menon, Ramesh Menon, Aishwarya Ramachandran, Navin Mathew, Oommen K Mathew

Sci Rep· November 2020

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A knowledge-driven protocol for prediction of proteins of interest with an emphasis on biosynthetic pathways.
Adwait G Joshi, K Harini, Iyer Meenakshi, K Mohamed Shafi, Shaik Naseer Pasha, Oommen K Mathew

MethodsX· September 2020

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Sepsis in the era of data-driven medicine: personalizing risks, diagnoses, treatments and prognoses.
Andrew C Liu, Krishna Patel, Ramya Dhatri Vunikili, Kipp W Johnson, Fahad Abdu, Oommen K Mathew

Brief Bioinform· July 2020

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Dataset for the combined transcriptome assembly of and functional annotation.
K Mohamed Shafi, Adwait G Joshi, Iyer Meenakshi, Shaik Naseer Pasha, K Harini, Oommen K Mathew

Data Brief· June 2020

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The transcriptome enables the identification of candidate genes behind medicinal value of Drumstick tree (Moringa oleifera).
Shaik Naseer Pasha, K Mohamed Shafi, Adwait G Joshi, Iyer Meenakshi, K Harini, Oommen K Mathew

Genomics· January 2020

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The Indian cobra reference genome and transcriptome enables comprehensive identification of venom toxins.
Kushal Suryamohan, Sajesh P Krishnankutty, Joseph Guillory, Matthew Jevit, Markus S Schröder, Oommen K Mathew

Nat Genet· January 2020

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Draft Genome Sequence of Freshwater-Derived sp. Strain BPSDS2, Isolated from Damte Stream, Northeast India.
Zothanpuia, Ajit Kumar Passari, Purbajyoti Deka, Vinay Rajput, Lakshmi P M Priya, Oommen K Mathew

Microbiol Resour Announc· October 2019

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Draft Genome Sequence of Streptomyces thermocarboxydus BPSAC147, a Potentially Plant Growth-Promoting Endophytic Bacterium.
Ajit Kumar Passari, Vinay Rajput, Zothanpuia, Lakshmi P M Priya, Mahesh Dharne, Oommen K Mathew

Microbiol Resour Announc· June 2019

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Draft Genome Sequence of Plant Growth-Promoting Endophytic BPSAC84, Isolated from the Medicinal Plant .
Ajit Kumar Passari, Vinay Rajput, Zothanpuia, Lakshmi P M Priya, Mahesh Dharne, Oommen K Mathew

Microbiol Resour Announc· May 2019

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PASS2 version 6: a database of structure-based sequence alignments of protein domain superfamilies in accordance with SCOPe.
Pritha Ghosh, Teerna Bhattacharyya, Oommen K Mathew, Ramanathan Sowdhamini

Database (Oxford)· January 2019

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RStrucFam: a web server to associate structure and cognate RNA for RNA-binding proteins from sequence information.
Pritha Ghosh, Oommen K Mathew, Ramanathan Sowdhamini

BMC Bioinformatics· October 2016

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PIMADb: A Database of Protein-Protein Interactions in Huge Macromolecular Assemblies.
Oommen K Mathew, Ramanathan Sowdhamini

Bioinform Biol Insights· August 2016

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An Approach to Function Annotation for Proteins of Unknown Function (PUFs) in the Transcriptome of Indian Mulberry.
K H Dhanyalakshmi, Mahantesha B N Naika, R S Sajeevan, Oommen K Mathew, K Mohamed Shafi

PLoS One· July 2016

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PASS2 database for the structure-based sequence alignment of distantly related SCOP domain superfamilies: update to version 5 and added features.
Arumugam Gandhimathi, Pritha Ghosh, Sridhar Hariharaputran, Oommen K Mathew, R Sowdhamini

Nucleic Acids Res· January 2016

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