Publications by authors named "Palash Bera"

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How good is generative diffusion model for enhanced sampling of protein conformations across scales and in all-atom resolution?
Palash Bera, Jagannath Mondal

J Chem Phys· September 2025

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Accurate prediction of the kinetic sequence of physicochemical states using generative artificial intelligence.
Palash Bera, Jagannath Mondal

Chem Sci· May 2025

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Protein translation can fluidize bacterial cytoplasm.
Palash Bera, Abdul Wasim, Somenath Bakshi, Jagannath Mondal

PNAS Nexus· December 2024

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Machine learning unravels inherent structural patterns in Escherichia coli Hi-C matrices and predicts chromosome dynamics.
Palash Bera, Jagannath Mondal

Nucleic Acids Res· October 2024

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Diverse morphology and motility induced emergent order in bacterial collectives.
Kaustav Mondal, Palash Bera, Pushpita Ghosh

J Chem Phys· September 2024

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Elucidation of Spatial Positioning of Ribosomes around Chromosome in Cytoplasm via a Data-Informed Polymer-Based Model.
Abdul Wasim, Palash Bera, Jagannath Mondal

J Phys Chem B· April 2024

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Development of a Data-Driven Integrative Model of a Bacterial Chromosome.
Abdul Wasim, Palash Bera, Jagannath Mondal

J Chem Theory Comput· February 2024

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Interplay of cell motility and self-secreted extracellular polymeric substance induced depletion effects on spatial patterning in a growing microbial colony.
Palash Bera, Abdul Wasim, Pushpita Ghosh

Soft Matter· November 2023

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Dual enzyme-powered chemotactic cross β amyloid based functional nanomotors.
Chandranath Ghosh, Souvik Ghosh, Ayan Chatterjee, Palash Bera, Dileep Mampallil

Nat Commun· September 2023

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A mechanistic understanding of microcolony morphogenesis: coexistence of mobile and sessile aggregates.
Palash Bera, Abdul Wasim, Pushpita Ghosh

Soft Matter· February 2023

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Interpretation of organizational role of proteins on E. coli nucleoid via Hi-C integrated model.
Abdul Wasim, Ankit Gupta, Palash Bera, Jagannath Mondal

Biophys J· January 2023

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Hi-C embedded polymer model of Escherichia coli reveals the origin of heterogeneous subdiffusion in chromosomal loci.
Palash Bera, Abdul Wasim, Jagannath Mondal

Phys Rev E· June 2022

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Mechanistic underpinning of cell aspect ratio-dependent emergent collective motions in swarming bacteria.
Palash Bera, Abdul Wasim, Jagannath Mondal, Pushpita Ghosh

Soft Matter· August 2021

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