Publications by authors named "Pan-Jun Kim"

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Enlightening the blind spot of the Michaelis-Menten rate law: The role of relaxation dynamics in molecular complex formation.
Junghun Chae, Roktaek Lim, Thomas L P Martin, Cheol-Min Ghim, Pan-Jun Kim

J Theor Biol· January 2025

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Generalized Michaelis-Menten rate law with time-varying molecular concentrations.
Roktaek Lim, Thomas L P Martin, Junghun Chae, Woo Joong Kim, Cheol-Min Ghim, Pan-Jun Kim

PLoS Comput Biol· December 2023

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Backward simulation for inferring hidden biomolecular kinetic profiles.
Junghun Chae, Roktaek Lim, Cheol-Min Ghim, Pan-Jun Kim

STAR Protoc· December 2021

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Cost-effective circadian mechanism: rhythmic degradation of circadian proteins spontaneously emerges without rhythmic post-translational regulation.
Roktaek Lim, Junghun Chae, David E Somers, Cheol-Min Ghim, Pan-Jun Kim

iScience· July 2021

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Publisher Correction: Large-scale metabolic interaction network of the mouse and human gut microbiota.
Roktaek Lim, Josephine Jill T Cabatbat, Thomas L P Martin, Haneul Kim, Seunghyeon Kim, Pan-Jun Kim

Sci Data· August 2020

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Large-scale metabolic interaction network of the mouse and human gut microbiota.
Roktaek Lim, Josephine Jill T Cabatbat, Thomas L P Martin, Haneul Kim, Seunghyeon Kim, Pan-Jun Kim

Sci Data· June 2020

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Waveforms of molecular oscillations reveal circadian timekeeping mechanisms.
Hang-Hyun Jo, Yeon Jeong Kim, Jae Kyoung Kim, Mathias Foo, David E Somers, Pan-Jun Kim

Commun Biol· November 2018

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Nutritionally recommended food for semi- to strict vegetarian diets based on large-scale nutrient composition data.
Seunghyeon Kim, Michael F Fenech, Pan-Jun Kim

Sci Rep· March 2018

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Global metabolic interaction network of the human gut microbiota for context-specific community-scale analysis.
Jaeyun Sung, Seunghyeon Kim, Josephine Jill T Cabatbat, Sungho Jang, Yong-Su Jin, Pan-Jun Kim

Nat Commun· June 2017

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Metabolic modeling with Big Data and the gut microbiome.
Jaeyun Sung, Vanessa Hale, Annette C Merkel, Pan-Jun Kim, Nicholas Chia

Appl Transl Genom· September 2016

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Inverse correlation between longevity and developmental rate among wild C. elegans strains.
Yujin Lee, Wooseon Hwang, Juyoung Jung, Sangsoon Park, Josephine Jill T Cabatbat, Pan-Jun Kim

Aging (Albany NY)· May 2016

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Fumarate-Mediated Persistence of Escherichia coli against Antibiotics.
Jun-Seob Kim, Da-Hyeong Cho, Paul Heo, Suk-Chae Jung, Myungseo Park, Pan-Jun Kim

Antimicrob Agents Chemother· April 2016

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Uncovering the nutritional landscape of food.
Seunghyeon Kim, Jaeyun Sung, Mathias Foo, Yong-Su Jin, Pan-Jun Kim

PLoS One· March 2016

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Kernel Architecture of the Genetic Circuitry of the Arabidopsis Circadian System.
Mathias Foo, David E Somers, Pan-Jun Kim

PLoS Comput Biol· February 2016

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Anatomy of scientific evolution.
Jinhyuk Yun, Pan-Jun Kim, Hawoong Jeong

PLoS One· January 2016

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Enhanced hexose fermentation by Saccharomyces cerevisiae through integration of stoichiometric modeling and genetic screening.
Josh Quarterman, Soo Rin Kim, Pan-Jun Kim, Yong-Su Jin

J Biotechnol· January 2015

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Halomonas sulfidaeris-dominated microbial community inhabits a 1.8 km-deep subsurface Cambrian Sandstone reservoir.
Yiran Dong, Charu Gupta Kumar, Nicholas Chia, Pan-Jun Kim, Philip A Miller

Environ Microbiol· June 2014

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Multi-study integration of brain cancer transcriptomes reveals organ-level molecular signatures.
Jaeyun Sung, Pan-Jun Kim, Shuyi Ma, Cory C Funk, Andrew T Magis

PLoS Comput Biol· February 2014

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Genetic co-occurrence network across sequenced microbes.
Pan-Jun Kim, Nathan D Price

PLoS Comput Biol· December 2011

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Global organization of protein complexome in the yeast Saccharomyces cerevisiae.
Sang Hoon Lee, Pan-Jun Kim, Hawoong Jeong

BMC Syst Biol· August 2011

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Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052.
Caroline B Milne, James A Eddy, Ravali Raju, Soroush Ardekani, Pan-Jun Kim

BMC Syst Biol· August 2011

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Googling social interactions: web search engine based social network construction.
Sang Hoon Lee, Pan-Jun Kim, Yong-Yeol Ahn, Hawoong Jeong

PLoS One· July 2010

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Macroscopic kinetic effect of cell-to-cell variation in biochemical reactions.
Pan-Jun Kim, Nathan D Price

Phys Rev Lett· April 2010

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Accomplishments in genome-scale in silico modeling for industrial and medical biotechnology.
Caroline B Milne, Pan-Jun Kim, James A Eddy, Nathan D Price

Biotechnol J· December 2009

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Centralized modularity of N-linked glycosylation pathways in mammalian cells.
Pan-Jun Kim, Dong-Yup Lee, Hawoong Jeong

PLoS One· October 2009

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