Publications by authors named "Pascal Costanza"

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Halvade somatic: Somatic variant calling with Apache Spark.
Dries Decap, Louise de Schaetzen van Brienen, Maarten Larmuseau, Pascal Costanza, Charlotte Herzeel

Gigascience· January 2022

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Multithreaded variant calling in elPrep 5.
Charlotte Herzeel, Pascal Costanza, Dries Decap, Jan Fostier, Roel Wuyts

PLoS One· July 2021

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elPrep 4: A multithreaded framework for sequence analysis.
Charlotte Herzeel, Pascal Costanza, Dries Decap, Jan Fostier, Wilfried Verachtert

PLoS One· November 2019

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Comparing Ease of Programming in C++, Go, and Java for Implementing a Next-Generation Sequencing Tool.
Pascal Costanza, Charlotte Herzeel, Wilfried Verachtert

Evol Bioinform Online· August 2019

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A comparison of three programming languages for a full-fledged next-generation sequencing tool.
Pascal Costanza, Charlotte Herzeel, Wilfried Verachtert

BMC Bioinformatics· June 2019

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Generic accelerated sequence alignment in SeqAn using vectorization and multi-threading.
René Rahn, Stefan Budach, Pascal Costanza, Marcel Ehrhardt, Jonny Hancox

Bioinformatics· October 2018

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Halvade-RNA: Parallel variant calling from transcriptomic data using MapReduce.
Dries Decap, Joke Reumers, Charlotte Herzeel, Pascal Costanza, Jan Fostier

PLoS One· August 2017

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elPrep: High-Performance Preparation of Sequence Alignment/Map Files for Variant Calling.
Charlotte Herzeel, Pascal Costanza, Dries Decap, Jan Fostier, Joke Reumers

PLoS One· April 2016

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Halvade: scalable sequence analysis with MapReduce.
Dries Decap, Joke Reumers, Charlotte Herzeel, Pascal Costanza, Jan Fostier

Bioinformatics· August 2015

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