Publications by authors named "Patrick Flaherty"

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Opportunities to Improve Antibiotic Stewardship, and Identification of Blood Biomarkers Associated with Bacteremia Following CAR-T Cell Therapy.
Sai Kit Ng, Patrick W Flaherty, Melissa Ancheta, Karyn A Tindbaek, Mandeep K Sekhon

Transplant Cell Ther· October 2025

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The impact of CMV reactivation on mortality after chimeric antigen receptor T-cell therapy.
Eleftheria Kampouri, Patrick Flaherty, Hu Xie, Mandeep K Sekhon, Clementine Chalal

Blood Adv· June 2025

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Stress testing reveals selective vulnerabilities in protein homeostasis.
Berent Aldikacti, Hidayet Putun, Vishal Sarsani, Rilee Zeinert, Patrick Flaherty

bioRxiv· June 2025

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Reply to Oltolini et al.
Ila Nimgaonkar, Patrick W Flaherty, Masumi Ueda Oshima, Joshua A Hill

Clin Infect Dis· March 2025

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Discovering genetic modulators of the protein homeostasis system through multilevel analysis.
Vishal Sarsani, Berent Aldikacti, Tingting Zhao, Shai He, Peter Chien, Patrick Flaherty

PNAS Nexus· January 2025

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Development of a biomarker prediction model for post-trauma multiple organ failure/dysfunction syndrome based on the blood transcriptome.
Ivan Duran, Ankita Banerjee, Patrick J Flaherty, Yok-Ai Que, Colleen M Ryan

Ann Intensive Care· August 2024

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Outcomes in Hematopoietic Cell Transplant and Chimeric Antigen Receptor T-Cell Therapy Recipients With Pre-Cellular Therapy SARS-CoV-2 Infection.
Ila Nimgaonkar, Leah H Yoke, Pavitra Roychoudhury, Patrick W Flaherty, Masumi Ueda Oshima

Clin Infect Dis· July 2024

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Discovering Genetic Modulators of the Protein Homeostasis System through Multilevel Analysis.
Vishal Sarsani, Berent Aldikacti, Tingting Zhao, Shai He, Peter Chien, Patrick Flaherty

bioRxiv· February 2024

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A PREVENTIVE TOOL FOR PREDICTING BLOODSTREAM INFECTIONS IN CHILDREN WITH BURNS.
Amy Tsurumi, Patrick J Flaherty, Yok-Ai Que, Colleen M Ryan, Ankita Banerjee

Shock· March 2023

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Identification of significant gene expression changes in multiple perturbation experiments using knockoffs.
Tingting Zhao, Guangyu Zhu, Harsh Vardhan Dubey, Patrick Flaherty

Brief Bioinform· March 2023

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Crystal structure of 4-bromo--(propyl-carbamo-yl)benzene-sulfonamide.
Mustafa Bookwala, Saloni Patel, Patrick T Flaherty, Peter L D Wildfong

Acta Crystallogr E Crystallogr Commun· May 2022

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MAP3K Family Review and Correlations with Patient Survival Outcomes in Various Cancer Types.
Khoa Nguyen, Minh N Tran, Andrew Rivera, Thomas Cheng, Gabrielle O Windsor, Patrick T Flaherty

Front Biosci (Landmark Ed)· May 2022

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Model-based identification of conditionally-essential genes from transposon-insertion sequencing data.
Vishal Sarsani, Berent Aldikacti, Shai He, Rilee Zeinert, Peter Chien, Patrick Flaherty

PLoS Comput Biol· March 2022

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Dual inhibition of MEK1/2 and MEK5 suppresses the EMT/migration axis in triple-negative breast cancer through FRA-1 regulation.
Van T Hoang, Margarite D Matossian, Jacqueline La, Kristine Hoang, Deniz A Ucar, Patrick T Flaherty

J Cell Biochem· August 2021

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Diverse and converging roles of ERK1/2 and ERK5 pathways on mesenchymal to epithelial transition in breast cancer.
Akshita B Bhatt, Thomas D Wright, Van Barnes, Suravi Chakrabarty, Margarite D Matossian, Patrick T Flaherty

Transl Oncol· June 2021

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A BAYESIAN NONPARAMETRIC MODEL FOR INFERRING SUBCLONAL POPULATIONS FROM STRUCTURED DNA SEQUENCING DATA.
Shai He, Aaron Schein, Vishal Sarsani, Patrick Flaherty

Ann Appl Stat· June 2021

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Constitutive activation of MEK5 promotes a mesenchymal and migratory cell phenotype in triple negative breast cancer.
Margarite D Matossian, Van T Hoang, Hope E Burks, Jacqueline La, Steven Elliott, Patrick T Flaherty

Oncoscience· May 2021

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Crystal structure of -butyl 4-[4-(4-fluoro-phen-yl)-2-methyl-but-3-yn-2-yl]piperazine-1-carboxyl-ate.
Ashwini Gumireddy, Kevin DeBoyace, Alexander Rupprecht, Mohit Gupta, Saloni Patel, Patrick T Flaherty

Acta Crystallogr E Crystallogr Commun· April 2021

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Chronic but not acute pharmacological activation of SERCA induces behavioral and neurochemical effects in male and female mice.
Aikaterini Britzolaki, Claire C Cronin, Patrick R Flaherty, Riely L Rufo, Pothitos M Pitychoutis

Behav Brain Res· February 2021

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Molecular Mechanisms of Epithelial to Mesenchymal Transition Regulated by ERK5 Signaling.
Akshita B Bhatt, Saloni Patel, Margarite D Matossian, Deniz A Ucar, Lucio Miele, Patrick T Flaherty

Biomolecules· January 2021

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Multi-Biomarker Prediction Models for Multiple Infection Episodes Following Blunt Trauma.
Amy Tsurumi, Patrick J Flaherty, Yok-Ai Que, Colleen M Ryan, April E Mendoza

iScience· November 2020

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ERK5 Is Required for Tumor Growth and Maintenance Through Regulation of the Extracellular Matrix in Triple Negative Breast Cancer.
Van T Hoang, Margarite D Matossian, Deniz A Ucar, Steven Elliott, Jacqueline La, Patrick T Flaherty

Front Oncol· August 2020

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SCSIM: Jointly simulating correlated single-cell and bulk next-generation DNA sequencing data.
Collin Giguere, Harsh Vardhan Dubey, Vishal Kumar Sarsani, Hachem Saddiki, Shai He, Patrick Flaherty

BMC Bioinformatics· May 2020

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Pharmacological inhibition of the MEK5/ERK5 and PI3K/Akt signaling pathways synergistically reduces viability in triple-negative breast cancer.
Thomas D Wright, Christopher Raybuck, Akshita Bhatt, Darlene Monlish, Suravi Chakrabarty, Patrick T Flaherty

J Cell Biochem· February 2020

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Targeted Metabolomic Profiling Reveals Association Between Altered Amino Acids and Poor Functional Recovery After Stroke.
Xin Wang, Tao Liu, Haixin Song, Shaoyang Cui, Gang Liu, Patrick Flaherty

Front Neurol· January 2020

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