Publications by authors named "Patrick Gaffney"

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Vitamin supplementation in the treatment of optic neuritis: A systematic review and meta-analysis.
Patrick J Gaffney, Rajesh K Gupta

Mult Scler Relat Disord· December 2025

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Clinical and molecular characterization of SLC31A1-related developmental and epileptic encephalopathy: insights from 13 new cases.
Natalia Juliá-Palacios, Gerard Muñoz-Pujol, Reza Maroofian, Aida M Bertoli-Avella, Marta Gómez-Chiari, Patrick Gaffney

Brain Commun· October 2025

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Variants in the DDX6-CXCR5 autoimmune disease risk locus influence the regulatory network in immune cells and salivary gland.
Mandi M Wiley, Marcin Radziszewski, Bhuwan Khatri, Michelle L Joachims, Kandice L Tessneer, Patrick M Gaffney

Ann Rheum Dis· September 2025

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Cardiac autoantibodies promote a fibrotic transcriptome and reduced ventricular recovery in human myocarditis.
Jennifer M Myers, Clayton Sandel, Kathy Alvarez, Lori Garman, Graham Wiley, Patrick Gaffney

Front Immunol· May 2025

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Defining three dimensional chromatin structures of pediatric and adolescent B cells using primary B cell and EBV-immortalized B cell reference genomes.
Kaiyu Jiang, Yao Fu, Jennifer A Kelly, Patrick M Gaffney, Lucy C Holmes

BMC Med Genomics· May 2025

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Antioxidant Therapies in the Treatment of Aminoglycoside-Induced Ototoxicity: A Meta-Analysis.
Patrick J Gaffney, Kunal R Shetty, Sancak Yuksel, Vivian F Kaul

Laryngoscope· April 2025

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Analysis of nuclear receptor expression in head and neck cancer.
Lindsey Mortensen, Cynthia K Koenigsberg, Tyler G Kimbrough, Jesse Ping, Gema Souto Adeva, Patrick Gaffney

Cancer Genet· January 2025

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Bacteria-Produced Algicide for Field Control of Toxic Dinoflagellates Does Not Cause a Cortisol Stress Response in Two Estuarine Fish Species.
Victoria E Simons, Timothy E Targett, Patrick M Gaffney, Kathryn J Coyne

Mar Biotechnol (NY)· January 2025

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Genetic mapping across autoimmune diseases reveals shared associations and mechanisms.
Matthew R Lincoln, Noah Connally, Pierre-Paul Axisa, Christiane Gasperi, Mitja Mitrovic, Patrick M Gaffney

Nat Genet· May 2024

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Massively parallel reporter assay confirms regulatory potential of hQTLs and reveals important variants in lupus and other autoimmune diseases.
Yao Fu, Jennifer A Kelly, Jaanam Gopalakrishnan, Richard C Pelikan, Kandice L Tessneer, Patrick M Gaffney

HGG Adv· April 2024

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Potential Roles of Activin in Head and Neck Squamous Cell Carcinoma Progression and Mortality.
Seth Buryska, Ketan Patel, Beverly Wuertz, Patrick M Gaffney, Frank Ondrey

Anticancer Res· December 2023

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Taming the HLA for single-cell genomics.
Jennifer A Kelly, Kandice L Tessneer, Patrick M Gaffney

Nat Genet· December 2023

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Variants in the autoimmune disease risk locus influence the regulatory network in immune cells and salivary gland.
Mandi M Wiley, Bhuwan Khatri, Michelle L Joachims, Kandice L Tessneer, Anna M Stolarczyk, Patrick M Gaffney

bioRxiv· October 2023

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Comparison of the three-dimensional chromatin structures of adolescent and adult peripheral blood B cells: implications for the study of pediatric autoimmune diseases.
Kaiyu Jiang, Yao Fu, Jennifer A Kelly, Patrick M Gaffney, Lucy C Holmes

bioRxiv· September 2023

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Massively Parallel Reporter Assay Confirms Regulatory Potential of hQTLs and Reveals Important Variants in Lupus and Other Autoimmune Diseases.
Yao Fu, Jennifer A Kelly, Jaanam Gopalakrishnan, Richard C Pelikan, Kandice L Tessneer, Patrick M Gaffney

bioRxiv· August 2023

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Author Correction: Genome-wide association study identifies Sjögren's risk loci with functional implications in immune and glandular cells.
Bhuwan Khatri, Kandice L Tessneer, Astrid Rasmussen, Farhang Aghakhanian, Tove Ragna Reksten, Patrick M Gaffney

Nat Commun· February 2023

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Dysregulated long non-coding RNA in Sjögren's disease impacts both interferon and adaptive immune responses.
Michelle L Joachims, Bhuwan Khatri, Chuang Li, Kandice L Tessneer, John A Ice, Patrick M Gaffney

RMD Open· November 2022

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Author Correction: Genome-wide association study identifies Sjögren's risk loci with functional implications in immune and glandular cells.
Bhuwan Khatri, Kandice L Tessneer, Astrid Rasmussen, Farhang Aghakhanian, Tove Ragna Reksten, Patrick M Gaffney

Nat Commun· October 2022

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A Human MSH6 Germline Variant Associated With Systemic Lupus Erythematosus Induces Lupus-like Disease in Mice.
Rithy Meas, Joanne Nititham, Kimberly E Taylor, Stephen Maher, Kaylyn Clairmont, Patrick M Gaffney

ACR Open Rheumatol· September 2022

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Systemic lupus erythematosus variants modulate the function of an enhancer upstream of .
Satish Pasula, Jaanam Gopalakrishnan, Yao Fu, Kandice L Tessneer, Mandi M Wiley, Patrick M Gaffney

Front Genet· September 2022

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Communicating Precision Medicine Research: Multidisciplinary Teams and Diverse Communities.
Julie A Beans, Susan B Trinidad, Erika Blacksher, Vanessa Y Hiratsuka, Paul Spicer, Patrick M Gaffney

Public Health Genomics· August 2022

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Genome-wide association study identifies Sjögren's risk loci with functional implications in immune and glandular cells.
Bhuwan Khatri, Kandice L Tessneer, Astrid Rasmussen, Farhang Aghakhanian, Tove Ragna Reksten, Patrick M Gaffney

Nat Commun· July 2022

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Relationship Between a Vitamin D Genetic Risk Score and Autoantibodies Among First-Degree Relatives of Probands With Rheumatoid Arthritis and Systemic Lupus Erythematosus.
Lauren A Vanderlinden, Elizabeth A Bemis, Jennifer Seifert, Joel M Guthridge, Kendra A Young, Patrick M Gaffney

Front Immunol· June 2022

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Variants on the UBE2L3/YDJC Autoimmune Disease Risk Haplotype Increase UBE2L3 Expression by Modulating CCCTC-Binding Factor and YY1 Binding.
Jaanam Gopalakrishnan, Kandice L Tessneer, Yao Fu, Satish Pasula, Richard C Pelikan, Patrick M Gaffney

Arthritis Rheumatol· January 2022

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Deficiencies in the DNA Binding Protein ARID3a Alter Chromatin Structures Important for Early Human Erythropoiesis.
Joshua Garton, Malini Shankar, Brittany Chapman, Kira Rose, Patrick M Gaffney

Immunohorizons· October 2021

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