Publications by authors named "Patrick Zhao"

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Identification of small signaling peptide-encoding genes modulated by host and nonhost bacterial pathogens in Arabidopsis.
Jose Pedro Fonseca, Clarissa Boschiero, Pooja Pant, Raviraj Banakar, Sunhee Oh, Patrick Zhao

J Exp Bot· December 2025

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Identification of a Novel Intracellular Function of the Secreted Ribonuclease RNASE1 in Inhibiting Gene Expression.
Ragini Singh, Ahlina Archibald, Xiao Ling Li, Ravi Kumar, Shaoli Das, Patrick X Zhao

Mol Cell Biol· July 2025

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ETS1, a Target Gene of the EWSR1::FLI1 Fusion Oncoprotein, Regulates the Expression of the Focal Adhesion Protein TENSIN3.
Vernon Justice Ebegboni, Tamara L Jones, Tayvia Brownmiller, Patrick X Zhao, Erica C Pehrsson

Mol Cancer Res· July 2024

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The peptide GOLVEN10 alters root development and noduletaxis in Medicago truncatula.
Sonali Roy, Ivone Torres-Jerez, Shulan Zhang, Wei Liu, Katharina Schiessl, Patrick X Zhao

Plant J· May 2024

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Staufen1 Represses the FOXA1-Regulated Transcriptome by Destabilizing FOXA1 mRNA in Colorectal Cancer Cells.
Katherine R Pasterczyk, Xiao Ling Li, Ragini Singh, Meira S Zibitt, Corrine Corrina R Hartford, Patrick X Zhao

Mol Cell Biol· March 2024

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ETS1, a target gene of the EWSR1::FLI1 fusion oncoprotein, regulates the expression of the focal adhesion protein TENSIN3.
Vernon Justice Ebegboni, Tamara L Jones, Tayvia Brownmiller, Patrick X Zhao, Erica C Pehrsson

bioRxiv· December 2023

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Annotated genome sequence of a fast-growing diploid clone of red alder (Alnus rubra Bong.).
Kim K Hixson, Diego A Fajardo, Nicholas P Devitt, Johnny A Sena, Michael A Costa, Patrick Xuechun Zhao

G3 (Bethesda)· June 2023

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Comparative Genome Analyses of Plant Rust Pathogen Genomes Reveal a Confluence of Pathogenicity Factors to Quell Host Plant Defense Responses.
Raja Sekhar Nandety, Upinder S Gill, Nick Krom, Xinbin Dai, Yibo Dong, Patrick X Zhao

Plants (Basel)· July 2022

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Fungi Modulate the Switchgrass Root Transcriptome to Circumvent Host Defenses and Establish a Symbiotic Relationship.
Prasun Ray, Yingqing Guo, Myoung-Hwan Chi, Nick Krom, Clarissa Boschiero, Patrick Zhao

Mol Plant Microbe Interact· October 2021

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PIP-SNP: a pipeline for processing SNP data featured as linkage disequilibrium bin mapping, genotype imputing and marker synthesizing.
Wenchao Zhang, Yun Kang, Xinbin Dai, Shizhong Xu, Patrick X Zhao

NAR Genom Bioinform· September 2021

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Genome sequence and evolution of Betula platyphylla.
Su Chen, Yucheng Wang, Lili Yu, Tao Zheng, Sui Wang, Patrick X Zhao

Hortic Res· February 2021

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Distinguishing HapMap Accessions Through Recursive Set Partitioning in Hierarchical Decision Trees.
Wenchao Zhang, Yun Kang, Xiaofei Cheng, Jiangqi Wen, Hongying Zhang, Patrick Xuechun Zhao

Front Plant Sci· February 2021

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LegumeIP V3: from models to crops-an integrative gene discovery platform for translational genomics in legumes.
Xinbin Dai, Zhaohong Zhuang, Clarissa Boschiero, Yibo Dong, Patrick X Zhao

Nucleic Acids Res· January 2021

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Iron-Sulfur Cluster Protein NITROGEN FIXATION S-LIKE1 and Its Interactor FRATAXIN Function in Plant Immunity.
Jose Pedro Fonseca, Hee-Kyung Lee, Clarissa Boschiero, Marcus Griffiths, Seonghee Lee, Patrick Zhao

Plant Physiol· November 2020

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: A Web Server for Designing Effective and Specific Plant siRNAs with Genome-Wide Off-Target Assessment.
Firoz Ahmed, Muthappa Senthil-Kumar, Xinbin Dai, Vemanna S Ramu, Seonghee Lee, Patrick Xuechun Zhao

Plant Physiol· September 2020

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The CLE53-SUNN genetic pathway negatively regulates arbuscular mycorrhiza root colonization in Medicago truncatula.
Magda Karlo, Clarissa Boschiero, Katrine Gram Landerslev, Gonzalo Sancho Blanco, Jiangqi Wen, Patrick X Zhao

J Exp Bot· August 2020

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Insertional mutagenesis of Brachypodium distachyon using the Tnt1 retrotransposable element.
Raja Sekhar Nandety, Juan C Serrani-Yarce, Upinder S Gill, Sunhee Oh, Hee-Kyung Lee, Patrick X Zhao

Plant J· August 2020

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MtSSPdb: The Small Secreted Peptide Database.
Clarissa Boschiero, Xinbin Dai, Peter Knut Lundquist, Sonali Roy, Thomas Christian de Bang, Zhaohong Zhuang, Patrick Xuechun Zhao

Plant Physiol· May 2020

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GPU empowered pipelines for calculating genome-wide kinship matrices with ultra-high dimensional genetic variants and facilitating 1D and 2D GWAS.
Wenchao Zhang, Xinbin Dai, Shizhong Xu, Patrick X Zhao

NAR Genom Bioinform· March 2020

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Draft Genome Sequence Resource of Switchgrass Rust Pathogen, Isolate Ard-01.
Upinder S Gill, Raja Sekhar Nandety, Nick Krom, Xinbin Dai, Zhaohong Zhuang, Patrick X Zhao

Phytopathology· September 2019

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Identification and Functional Investigation of Genome-Encoded, Small, Secreted Peptides in Plants.
Clarissa Boschiero, Peter K Lundquist, Sonali Roy, Xinbin Dai, Patrick X Zhao

Curr Protoc Plant Biol· September 2019

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GWASpro: a high-performance genome-wide association analysis server.
Bongsong Kim, Xinbin Dai, Wenchao Zhang, Zhaohong Zhuang, Darlene L Sanchez, Patrick X Zhao

Bioinformatics· July 2019

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A microRNA biogenesis-like pathway for producing phased small interfering RNA from a long non-coding RNA in rice.
Ji Huang, Ruqin Wang, Xinbin Dai, Jiejie Feng, Hongsheng Zhang, Patrick X Zhao

J Exp Bot· March 2019

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2D association and integrative omics analysis in rice provides systems biology view in trait analysis.
Wenchao Zhang, Xinbin Dai, Shizhong Xu, Patrick X Zhao

Commun Biol· September 2018

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psRNATarget: a plant small RNA target analysis server (2017 release).
Xinbin Dai, Zhaohong Zhuang, Patrick Xuechun Zhao

Nucleic Acids Res· July 2018

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