Publications by authors named "Paul O'Reilly"

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Translational AI and Deep Learning in Diagnostic Pathology.
Ahmed Serag, Adrian Ion-Margineanu, Hammad Qureshi, Ryan McMillan, Marie-Judith Saint Martin, Jim Diamond, Paul O'Reilly, Peter Hamilton

October 2019

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AI driven pre-regulatory validation of PD-L1 analysis in lung cancer.
Yasmine Makhlouf, Perry Maxwell, Paul O'Reilly, Alice Geaney, Jacqueline A Jamesa

Sci Rep· November 2025

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Genomic analyses reveal new insights into Alzheimer's disease.
Emil Uffelmann, Douglas P Wightman, Shahram Bahrami, Alexey A Shadrin, Vera Fominykh, Paul F O'Reilly

medRxiv· October 2025

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Polygenicity at the pathway level for anorexia nervosa.
Jiayi Xu, Jessica S Johnson, Chaoyu Liu, Judit García-González, Shing Wan Choi, Paul F O'Reilly

medRxiv· October 2025

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The impact of artificial intelligence on biomarker discovery.
Hira Javaid, Constantin Cezar Petrescu, Lisa J Schmunk, Jack M Monahan, Paul O'Reilly

Emerg Top Life Sci· September 2025

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The Gene Expression Landscape of Disease Genes.
Judit García-González, Alanna C Cote, Saul Garcia-Gonzalez, Lathan Liou, Paul F O'Reilly

medRxiv· April 2025

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Extended reality used in the treatment of phantom limb pain: a multicenter, double-blind, randomized controlled trial.
Eva Lendaro, Corry K Van der Sluis, Liselotte Hermansson, Lina Bunketorp-Käll, Helena Burger, Paul O'Reilly

Pain· March 2025

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Neuropsychiatric polygenic scores are weak predictors of professional categories.
Georgios Voloudakis, Karen Therrien, Simone Tomasi, Veera M Rajagopal, Shing Wan Choi, Paul F O'Reilly

Nat Hum Behav· March 2025

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Familial confounding in the associations between maternal health and autism.
Vahe Khachadourian, Elias Speleman Arildskov, Jakob Grove, Paul F O'Reilly, Joseph D Buxbaum

Nat Med· March 2025

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Clinical and Genomic Prediction of Coronary Artery Disease Subtypes.
Lathan Liou, Judit García-González, Hei Man Wu, Zhe Wang, Clive J Hoggart, Paul F O'Reilly

Arterioscler Thromb Vasc Biol· January 2025

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Sibling similarity can reveal key insights into genetic architecture.
Tade Souaiaia, Hei Man Wu, Clive Hoggart, Paul F O'Reilly

Elife· January 2025

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- Improving T-cell response quantification with holistic artificial intelligence based prediction in immunohistochemistry images.
Yasmine Makhlouf, Vivek Kumar Singh, Stephanie Craig, Aoife McArdle, Dominique French, Paul O'Reilly

Comput Struct Biotechnol J· December 2024

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Polygenic risk of social isolation behavior and its influence on psychopathology and personality.
Adam J Socrates, Niamh Mullins, Ruben C Gur, Raquel E Gur, Eli Stahl, Paul F O'Reilly

Mol Psychiatry· November 2024

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Striking Departures from Polygenic Architecture in the Tails of Complex Traits.
Tade Souaiaia, Hei Man Wu, Anil P S Ori, Shing Wan Choi, Clive J Hoggart, Paul F O'Reilly

bioRxiv· November 2024

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KRASFormer: a fully vision transformer-based framework for predictinggene mutations in histopathological images of colorectal cancer.
Vivek Kumar Singh, Yasmine Makhlouf, Md Mostafa Kamal Sarker, Stephanie Craig, Juvenal Baena, Paul O'Reilly

Biomed Phys Eng Express· July 2024

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Integrating human endogenous retroviruses into transcriptome-wide association studies highlights novel risk factors for major psychiatric conditions.
Rodrigo R R Duarte, Oliver Pain, Matthew L Bendall, Miguel de Mulder Rougvie, Jez L Marston, Paul F O'Reilly

Nat Commun· May 2024

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BridgePRS leverages shared genetic effects across ancestries to increase polygenic risk score portability.
Clive J Hoggart, Shing Wan Choi, Judit García-González, Tade Souaiaia, Michael Preuss, Paul F O'Reilly

Nat Genet· January 2024

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Translation of tissue-based artificial intelligence into clinical practice: from discovery to adoption.
Alice Geaney, Paul O'Reilly, Perry Maxwell, Jacqueline A James, Darragh McArt

Oncogene· November 2023

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Trumpet plots: visualizing the relationship between allele frequency and effect size in genetic association studies.
Lucia Corte, Lathan Liou, Paul F O'Reilly, Judit García-González

GigaByte· September 2023

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Polygenic risk of Social-isolation and its influence on social behavior, psychosis, depression and autism spectrum disorder.
Adam Socrates, Niamh Mullins, Ruben Gur, Raquel Gur, Eli Stahl, Paul O'Reilly

Res Sq· March 2023

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Non-additive effects of schizophrenia risk genes reflect convergent downstream function.
Pj Michael Deans, Carina Seah, Jessica Johnson, Judit Garcia Gonzalez, Kayla Townsley, Paul O'Reilly

medRxiv· March 2023

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PRSet: Pathway-based polygenic risk score analyses and software.
Shing Wan Choi, Judit García-González, Yunfeng Ruan, Hei Man Wu, Christian Porras, Paul F O'Reilly

PLoS Genet· February 2023

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: A powerful trans-ancestry Polygenic Risk Score method.
Clive Hoggart, Shing Wan Choi, Judit García-González, Tade Souaiaia, Michael Preuss, Paul O'Reilly

bioRxiv· February 2023

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EraSOR: a software tool to eliminate inflation caused by sample overlap in polygenic score analyses.
Shing Wan Choi, Timothy Shin Heng Mak, Clive J Hoggart, Paul F O'Reilly

Gigascience· December 2022

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Particle swarm optimization artificial intelligence technique for gene signature discovery in transcriptomic cohorts.
Ross G Murphy, Alan Gilmore, Seedevi Senevirathne, Paul G O'Reilly, Melissa LaBonte Wilson

Comput Struct Biotechnol J· September 2022

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ICOSeg: Real-Time ICOS Protein Expression Segmentation from Immunohistochemistry Slides Using a Lightweight Conv-Transformer Network.
Vivek Kumar Singh, Md Mostafa Kamal Sarker, Yasmine Makhlouf, Stephanie G Craig, Matthew P Humphries, Paul O'Reilly

Cancers (Basel)· August 2022

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