Publications by authors named "Pawel P Labaj"

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High-altitude mountaineering induces adaptive gut microbiome shifts associated with dietary intake and performance markers.
Ewa Karpęcka-Gałka, Kinga Zielińska, Barbara Frączek, Paweł P Łabaj, Tomasz Kościółek

Sci Rep· October 2025

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Unique Athletic Gut Microbiomes and Their Role in Sports Performance: A Narrative Review.
Kinga Humińska-Lisowska, Paweł P Łabaj, Kinga Zielińska

J Hum Kinet· October 2025

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Robust software development practices improve citations of RNA-seq tools.
Sanskruti Sharma, Ecem Ilgun, Tuna Okcu, Vladyslav Ostash, Vitalina Bashynska, Pawel P Labaj

bioRxiv· September 2025

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Augmenting precision medicine via targeted RNA-Seq detection of expressed mutations.
Dan Li, Jianying Li, Donald J Johann, Daniel Butler, Guangchun Chen

NPJ Precis Oncol· June 2025

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Gut microbiome and blood biomarkers reveal differential responses to aerobic and anaerobic exercise in collegiate men of diverse training backgrounds.
Kinga Humińska-Lisowska, Monika Michałowska-Sawczyn, Tomasz Kosciolek, Paweł P Łabaj, Andrzej Kochanowicz

Sci Rep· May 2025

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VirulentHunter: deep learning-based virulence factor predictor illuminates pathogenicity in diverse microbial contexts.
Chen Chen, Yong Xu, Jian Ouyang, Xiangyi Xiong, Paweł P Łabaj

Brief Bioinform· May 2025

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Antimicrobial resistance in diverse urban microbiomes: uncovering patterns and predictive markers.
Rodolfo Brizola Toscan, Wojciech Lesiński, Piotr Stomma, Balakrishnan Subramanian, Paweł P Łabaj

Front Genet· January 2025

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Healthy microbiome-moving towards functional interpretation.
Kinga Zielińska, Klas I Udekwu, Witold Rudnicki, Alina Frolova, Paweł P Łabaj

Gigascience· January 2025

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Analysis of metagenomic data.
Shaopeng Liu, Judith S Rodriguez, Viorel Munteanu, Cynthia Ronkowski, Nitesh Kumar Sharma

Nat Rev Methods Primers· January 2025

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Adaptation to space conditions of novel bacterial species isolated from the International Space Station revealed by functional gene annotations and comparative genome analysis.
Lukasz M Szydlowski, Alper A Bulbul, Anna C Simpson, Deniz E Kaya, Nitin K Singh

Microbiome· October 2024

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Genomic reproducibility in the bioinformatics era.
Pelin Icer Baykal, Paweł Piotr Łabaj, Florian Markowetz, Lynn M Schriml, Daniel J Stekhoven

Genome Biol· August 2024

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Targeted DNA-seq and RNA-seq of Reference Samples with Short-read and Long-read Sequencing.
Binsheng Gong, Dan Li, Paweł P Łabaj, Bohu Pan, Natalia Novoradovskaya

Sci Data· August 2024

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Gut microbiome dynamics and predictive value in hospitalized COVID-19 patients: a comparative analysis of shallow and deep shotgun sequencing.
Katarzyna Kopera, Tomasz Gromowski, Witold Wydmański, Karolina Skonieczna-Żydecka, Agata Muszyńska

Front Microbiol· June 2024

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Microbiome features associated with performance measures in athletic and non-athletic individuals: A case-control study.
Kinga Humińska-Lisowska, Kinga Zielińska, Jan Mieszkowski, Monika Michałowska-Sawczyn, Paweł Cięszczyk

PLoS One· February 2024

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Advancements in bioinformatics and computational biology: 15th annual Polish Bioinformatic Society Symposium.
Joanna Zyla, Joanna Tobiasz, Justyna Mika, Paweł P Łabaj, Aleksandra Gruca

Bioinform Adv· January 2024

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Mycoparasitism related targets of Tmk1 indicate stimulating regulatory functions of this MAP kinase in Trichoderma atroviride.
Lea Atanasova, Martina Marchetti-Deschmann, Albert Nemes, Bianca Bruckner, Pavel Rehulka

Sci Rep· November 2023

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SARS-CoV-2 infection impairs NK cell functions activation of the LLT1-CD161 axis.
Marzena Lenart, Magdalena Górecka, Michal Bochenek, Emilia Barreto-Duran, Artur Szczepański

Front Immunol· June 2023

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Iron inactivation by Sporobolomyces ruberrimus and its potential role in plant metal stress protection. An in vitro study.
Roman J Jędrzejczyk, Maciej Gustab, Rafał Ważny, Agnieszka Domka, Przemysław J Jodłowski

Sci Total Environ· April 2023

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RNA-seq data science: From raw data to effective interpretation.
Dhrithi Deshpande, Karishma Chhugani, Yutong Chang, Aaron Karlsberg, Caitlin Loeffler

Front Genet· March 2023

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Editorial: Critical assessment of massive data analysis (CAMDA) annual conference 2021.
Paweł P Łabaj, Joaquin Dopazo, Wenzhong Xiao, David P Kreil

Front Genet· February 2023

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Remote opportunities for scholars in Ukraine.
Karishma Chhugani, Alina Frolova, Yuriy Salyha, Andrada Fiscutean, Oksana Zlenko

Science· December 2022

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Scientists without borders: lessons from Ukraine.
Walter Wolfsberger, Karishma Chhugani, Khrystyna Shchubelka, Alina Frolova, Yuriy Salyha

Gigascience· December 2022

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A history of the MetaSUB consortium: Tracking urban microbes around the globe.
Krista A Ryon, Braden T Tierney, Alina Frolova, Andre Kahles, Christelle Desnues

iScience· November 2022

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The SEQC2 epigenomics quality control (EpiQC) study.
Jonathan Foox, Jessica Nordlund, Claudia Lalancette, Ting Gong, Michelle Lacey

Genome Biol· December 2021

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Author Correction: The SEQC2 epigenomics quality control (EpiQC) study.
Jonathan Foox, Jessica Nordlund, Claudia Lalancette, Ting Gong, Michelle Lacey

Genome Biol· December 2021

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