Publications by authors named "Peipei Ping"

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Case Report: Exercise-associated changes of leukocyte gene expression in statin-associated myopathy.
Galyna Bondar, Abhinandan Das Mahapatra, Irina Silacheva, Tra-Mi Bao, Thomas Vu, PeiPei Ping

Front Pharmacol· December 2025

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Evidence-based Knowledge Synthesis and Hypothesis Validation: Navigating Biomedical Knowledge Bases via Explainable AI and Agentic Systems.
Alexander R Pelletier, Joseph Ramirez, Baradwaj Simha Sankar, Irsyad Adam, Yu Yan, Peipei Ping

J Vis Exp· June 2025

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Data-Driven Insights into the Association Between Oxidative Stress and Calcium-Regulating Proteins in Cardiovascular Disease.
Namuna Panday, Dibakar Sigdel, Irsyad Adam, Joseph Ramirez, Aarushi Verma, Peipei Ping

Antioxidants (Basel)· November 2024

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Missing Values in Longitudinal Proteome Dynamics Studies: Making a Case for Data Multiple Imputation.
Yu Yan, Baradwaj Simha Sankar, Bilal Mirza, Dominic C M Ng, Alexander R Pelletier, Peipei Ping

J Proteome Res· September 2024

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Building an Ethical and Trustworthy Biomedical AI Ecosystem for the Translational and Clinical Integration of Foundation Models.
Baradwaj Simha Sankar, Destiny Gilliland, Jack Rincon, Henning Hermjakob, Yu Yan, Peipei Ping

Bioengineering (Basel)· September 2024

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An Exercise Immune Fitness Test to Unravel Disease Mechanisms-A Proof-of-Concept Heart Failure Study.
Galyna Bondar, Abhinandan Das Mahapatra, Tra-Mi Bao, Irina Silacheva, Adrian Hairapetian, Peipei Ping

J Clin Med· May 2024

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Protocol for the prediction, interpretation, and mutation evaluation of post-translational modification using MIND-S.
Yu Yan, Dean Wang, Ruiqi Xin, Raine A Soriano, Dominic C M Ng, Peipei Ping

STAR Protoc· December 2023

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A Knowledge Graph Approach to Elucidate the Role of Organellar Pathways in Disease via Biomedical Reports.
Alexander R Pelletier, Dylan Steinecke, Dibakar Sigdel, Irsyad Adam, J Harry Caufield, Peipei Ping

J Vis Exp· October 2023

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MIND-S is a deep-learning prediction model for elucidating protein post-translational modifications in human diseases.
Yu Yan, Jyun-Yu Jiang, Mingzhou Fu, Ding Wang, Alexander R Pelletier, Peipei Ping

Cell Rep Methods· March 2023

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Cardiovascular informatics: building a bridge to data harmony.
John Harry Caufield, Dibakar Sigdel, John Fu, Howard Choi, Vladimir Guevara-Gonzalez, Peipei Ping

Cardiovasc Res· February 2022

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A Second Look at FAIR in Proteomic Investigations.
J Harry Caufield, John Fu, Ding Wang, Vladimir Guevara-Gonzalez, Wei Wang, Peipei Ping

J Proteome Res· May 2021

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A high-stringency blueprint of the human proteome.
Subash Adhikari, Edouard C Nice, Eric W Deutsch, Lydie Lane, Gilbert S Omenn, Peipei Ping

Nat Commun· October 2020

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Identifying temporal molecular signatures underlying cardiovascular diseases: A data science platform.
Neo Christopher Chung, Howard Choi, Ding Wang, Bilal Mirza, Alexander R Pelletier, Peipei Ping

J Mol Cell Cardiol· August 2020

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Reductive Stress Causes Pathological Cardiac Remodeling and Diastolic Dysfunction.
Gobinath Shanmugam, Ding Wang, Sellamuthu S Gounder, Jolyn Fernandes, Silvio H Litovsky, Peipei Ping

Antioxid Redox Signal· June 2020

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Heterogeneity of proteome dynamics between connective tissue phases of adult tendon.
Howard Choi, Deborah Simpson, Ding Wang, Mark Prescott, Andrew A Pitsillides, Peipei Ping

Elife· May 2020

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TAZ encodes tafazzin, a transacylase essential for cardiolipin formation and central to the etiology of Barth syndrome.
Anders O Garlid, Calvin T Schaffer, Jaewoo Kim, Hirsh Bhatt, Vladimir Guevara-Gonzalez, Peipei Ping

Gene· February 2020

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Unlocking the Secrets of Mitochondria in the Cardiovascular System: Path to a Cure in Heart Failure—A Report from the 2018 National Heart, Lung, and Blood Institute Workshop.
Rong Tian, Wilson S. Colucci, Zoltan Arany, Markus M. Bachschmid, Scott W. Ballinger, Peipei Ping

Circulation· October 2019

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Unsupervised classification of multi-omics data during cardiac remodeling using deep learning.
Neo Christopher Chung, Bilal Mirza, Howard Choi, Jie Wang, Ding Wang, Peipei Ping

Methods· August 2019

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Quantifying the impact of public omics data.
Yasset Perez-Riverol, Andrey Zorin, Gaurhari Dass, Manh-Tu Vu, Pan Xu, Peipei Ping

Nat Commun· August 2019

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New advances in extracting and learning from protein-protein interactions within unstructured biomedical text data.
J Harry Caufield, Peipei Ping

Emerg Top Life Sci· August 2019

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Cloud-Based Phrase Mining and Analysis of User-Defined Phrase-Category Association in Biomedical Publications.
Dibakar Sigdel, Vincent Kyi, Aiden Zhang, Shaun P Setty, David A Liem, Peipei Ping

J Vis Exp· February 2019

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Convergences of Life Sciences and Engineering in Understanding and Treating Heart Failure.
Joel L Berry, Wuqiang Zhu, Yao Liang Tang, Prasanna Krishnamurthy, Ying Ge, Peipei Ping

Circ Res· January 2019

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Machine Learning and Integrative Analysis of Biomedical Big Data.
Bilal Mirza, Wei Wang, Jie Wang, Howard Choi, Neo Christopher Chung, Peipei Ping

Genes (Basel)· January 2019

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A reference set of curated biomedical data and metadata from clinical case reports.
J Harry Caufield, Yijiang Zhou, Anders O Garlid, Shaun P Setty, David A Liem, Peipei Ping

Sci Data· November 2018

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A Metadata Extraction Approach for Clinical Case Reports to Enable Advanced Understanding of Biomedical Concepts.
John Harry Caufield, David A Liem, Anders O Garlid, Yijiang Zhou, Karol Watson, Peipei Ping

J Vis Exp· September 2018

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