Publications by authors named "Pekka Mark"

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Analysis of nasturtium TmNXG1 complexes by crystallography and molecular dynamics provides detailed insight into substrate recognition by family GH16 xyloglucan endo-transglycosylases and endo-hydrolases.
Pekka Mark, Martin J Baumann, Jens M Eklöf, Fredrika Gullfot, Gurvan Michel

Proteins· June 2009

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Recipe of Polarized One-Electron Potential Optimization for Development of Polarizable Force Fields.
Setsuko Nakagawa, Pekka Mark, Hans Ågren

J Chem Theory Comput· November 2007

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A molecular dynamics study of Cyclophilin A free and in complex with the Ala-Pro dipeptide.
Pekka Mark, Lennart Nilsson

Eur Biophys J· March 2007

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The MIPS mammalian protein-protein interaction database.
Philipp Pagel, Stefan Kovac, Matthias Oesterheld, Barbara Brauner, Irmtraud Dunger-Kaltenbach, Pekka Mark

Bioinformatics· March 2005

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Structure and dynamics of liquid water with different long-range interaction truncation and temperature control methods in molecular dynamics simulations.
Pekka Mark, Lennart Nilsson

J Comput Chem· October 2002

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