Publications by authors named "Pengning Xu"

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Structural and Dynamical Properties of Nucleic Acid Hairpins Implicated in Trinucleotide Repeat Expansion Diseases.
Feng Pan, Pengning Xu, Christopher Roland, Celeste Sagui, Keith Weninger

Biomolecules· October 2024

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Reply to: On the statistical foundation of a recent single molecule FRET benchmark.
Markus Götz, Anders Barth, Søren S-R Bohr, Richard Börner, Jixin Chen, Pengning Xu

Nat Commun· April 2024

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Time-resolved cryo-EM (TR-EM) analysis of substrate polyubiquitination by the RING E3 anaphase-promoting complex/cyclosome (APC/C).
Tatyana Bodrug, Kaeli A Welsh, Derek L Bolhuis, Ethan Paulаkonis, Raquel C Martinez-Chacin, Pengning Xu

Nat Struct Mol Biol· November 2023

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Frustration Between Preferred States of Complementary Trinucleotide Repeat DNA Hairpins Anticorrelates with Expansion Disease Propensity.
Pengning Xu, Jiahui Zhang, Feng Pan, Chelsea Mahn, Christopher Roland

J Mol Biol· May 2023

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A blind benchmark of analysis tools to infer kinetic rate constants from single-molecule FRET trajectories.
Markus Götz, Anders Barth, Søren S-R Bohr, Richard Börner, Jixin Chen, Pengning Xu

Nat Commun· September 2022

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Structure, dynamics, and regulation of TRF1-TIN2-mediated trans- and cis-interactions on telomeric DNA.
Hai Pan, Parminder Kaur, Ryan Barnes, Ariana C Detwiler, Samantha Lynn Sanford, Pengning Xu, Guozhou Xu

J Biol Chem· September 2021

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Molecular conformations and dynamics of nucleotide repeats associated with neurodegenerative diseases: double helices and CAG hairpin loops.
Feng Pan, Yuan Zhang, Pengning Xu, Viet Hoang Man, Christopher Roland

Comput Struct Biotechnol J· April 2021

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Dynamics of strand slippage in DNA hairpins formed by CAG repeats: roles of sequence parity and trinucleotide interrupts.
Pengning Xu, Feng Pan, Christopher Roland, Celeste Sagui, Keith Weninger

Nucleic Acids Res· March 2020

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