Publications by authors named "Pengpai Li"

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PGDTA: Predicting Drug-Target Affinity Using Three-Dimensional Structure of Protein Pocket and Graph Neural Network.
Yunhai Li, Pengpai Li, Duanchen Sun, Zhi-Ping Liu

IEEE Trans Comput Biol Bioinform· December 2025

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MOFNet: a deep learning framework for multi-omics data fusion in cancer subtype classification.
Guangji Zhang, Chunxiao Zhang, Pengpai Li, Duanchen Sun, Zhixia Yang, Zhi-Ping Liu

Mol Omics· December 2025

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Drug-target Affinity Prediction by Molecule Secondary Structure Representation Network.
Yuewei Tang, Yunhai Li, Pengpai Li, Zhi-Ping Liu

Curr Med Chem· September 2025

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RegNetwork 2025: an integrative data repository for gene regulatory networks in human and mouse.
Bowen Li, Chuanyuan Wang, Yijuan Wang, Pengpai Li, Zhi-Ping Liu

Nucleic Acids Res· August 2025

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SELECT: high-precision genome editing strategy via integration of CRISPR-Cas and DNA damage response for cross-species applications.
Xiaohang Liu, Huiping Tan, Junyan Wang, Yaming Cao, Pengpai Li, Lihan Zi, Lin Liu, Liming Ma, Liya Liang, Rongming Liu

Nucleic Acids Res· June 2025

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Negative sampling strategies impact the prediction of scale-free biomolecular network interactions with machine learning.
Pengpai Li, Bowen Shao, Guoqing Zhao, Zhi-Ping Liu

BMC Biol· May 2025

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Structure-Based Prediction of lncRNA-Protein Interactions by Deep Learning.
Pengpai Li, Zhi-Ping Liu

Methods Mol Biol· December 2024

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MuToN Quantifies Binding Affinity Changes upon Protein Mutations by Geometric Deep Learning.
Pengpai Li, Zhi-Ping Liu

Adv Sci (Weinh)· September 2024

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Early Progression of Abdominal Aortic Aneurysm is Decelerated by Improved Endothelial Barrier Function via ALDH2-LIN28B-ELK3 Signaling.
Kehui Yang, Sumei Cui, Jingwen Wang, Tonghui Xu, Han Du, Jialin Guo, Pengpai Li, Jiali Wang, Zhiping Liu

Adv Sci (Weinh)· November 2023

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GeoBind: segmentation of nucleic acid binding interface on protein surface with geometric deep learning.
Pengpai Li, Zhi-Ping Liu

Nucleic Acids Res· June 2023

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A new framework for host-pathogen interaction research.
Hong Yu, Li Li, Anthony Huffman, John Beverley, Junguk Hur, Yingtong Liu, Liang Cheng, Pengpai Li, Zhiping Liu

Front Immunol· January 2023

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PST-PRNA: prediction of RNA-binding sites using protein surface topography and deep learning.
Pengpai Li, Zhi-Ping Liu

Bioinformatics· April 2022

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Predicting lncRNA-Protein Interactions by Heterogenous Network Embedding.
Guoqing Zhao, Pengpai Li, Xu Qiao, Xianhua Han, Zhi-Ping Liu

Front Genet· February 2022

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