Publications by authors named "Peter Andeer"

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Synchronizing Germination Rates Across Plant Species for Fabricated Ecosystems EcoFAB 2.0.
Romane S F Charbeaux, Vicky J Waymouth, Jacob Calabria, Troy Miller, Peter Andeer

Bio Protoc· December 2025

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EcoBOT: an AI/ML enabled automated phenotyping capability for model plants.
Peter F Andeer, Petrus H Zwart, Daniela Ushizima, Marcus M Noack, Lloyd T Cornmesser

Front Plant Sci· December 2025

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Breaking the reproducibility barrier with standardized protocols for plant-microbiome research.
Vlastimil Novak, Peter F Andeer, Eoghan King, Jacob Calabria, Connor Fitzpatrick

PLoS Biol· September 2025

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Synthetic Scientific Image Generation with VAE, GAN, and Diffusion Model Architectures.
Zineb Sordo, Eric Chagnon, Zixi Hu, Jeffrey J Donatelli, Peter Andeer

J Imaging· July 2025

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Assessing horizontal gene transfer in the rhizosphere of using fabricated ecosystems (EcoFABs).
Shweta Priya, Silvia Rossbach, Thomas Eng, Hsiao-Han Lin, Peter F Andeer

Appl Environ Microbiol· November 2024

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EcoFAB 3.0: a sterile system for studying sorghum that replicates previous field and greenhouse observations.
Kshitiz Gupta, Yang Tian, Aymerick Eudes, Henrik V Scheller, Anup K Singh, Peter F Andeer

Front Plant Sci· October 2024

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RhizoNet segments plant roots to assess biomass and growth for enabling self-driving labs.
Zineb Sordo, Peter Andeer, James Sethian, Trent Northen, Daniela Ushizima

Sci Rep· June 2024

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Reproducible growth of in EcoFAB 2.0 reveals that nitrogen form and starvation modulate root exudation.
Vlastimil Novak, Peter F Andeer, Benjamin P Bowen, Yezhang Ding, Kateryna Zhalnina

Sci Adv· January 2024

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A combinatorial droplet microfluidic device integrated with mass spectrometry for enzyme screening.
Noel S Ha, Jenny R Onley, Kai Deng, Peter Andeer, Benjamin P Bowen

Lab Chip· July 2023

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Fine scale sampling reveals early differentiation of rhizosphere microbiome from bulk soil in young Brachypodium plant roots.
Shwetha M Acharya, Mon Oo Yee, Spencer Diamond, Peter F Andeer, Nameera F Baig

ISME Commun· June 2023

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N-dependent dynamics of root growth and nitrate and ammonium uptake are altered by the bacterium Herbaspirillum seropedicae in the cereal model Brachypodium distachyon.
Weiqi Kuang, Stefan Sanow, Jana M Kelm, Mark Müller Linow, Peter Andeer

J Exp Bot· September 2022

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Substrate Utilization and Competitive Interactions Among Soil Bacteria Vary With Life-History Strategies.
Ying Wang, Roland C Wilhelm, Tami L Swenson, Anita Silver, Peter F Andeer

Front Microbiol· June 2022

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A Defined Medium for Cultivation and Exometabolite Profiling of Soil Bacteria.
Markus de Raad, Yifan V Li, Jennifer V Kuehl, Peter F Andeer, Suzanne M Kosina

Front Microbiol· May 2022

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Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics.
Marc W Van Goethem, Andrew R Osborn, Benjamin P Bowen, Peter F Andeer, Tami L Swenson

Commun Biol· November 2021

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Mediterranean grassland soil C-N compound turnover is dependent on rainfall and depth, and is mediated by genomically divergent microorganisms.
Spencer Diamond, Peter F Andeer, Zhou Li, Alexander Crits-Christoph, David Burstein

Nat Microbiol· August 2019

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NADPH-dependent extracellular superoxide production is vital to photophysiology in the marine diatom .
Julia M Diaz, Sydney Plummer, Colleen M Hansel, Peter F Andeer, Mak A Saito

Proc Natl Acad Sci U S A· August 2019

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Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone.
Cristina N Butterfield, Zhou Li, Peter F Andeer, Susan Spaulding, Brian C Thomas

PeerJ· November 2016

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Extracellular haem peroxidases mediate Mn(II) oxidation in a marine Roseobacter bacterium via superoxide production.
Peter F Andeer, Deric R Learman, Matt McIlvin, James A Dunn, Colleen M Hansel

Environ Microbiol· October 2015

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Analysis of the xplAB-containing gene cluster involved in the bacterial degradation of the explosive hexahydro-1,3,5-trinitro-1,3,5-triazine.
Chun Shiong Chong, Dana Khdr Sabir, Astrid Lorenz, Cyril Bontemps, Peter Andeer

Appl Environ Microbiol· November 2014

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Identification of microbial populations assimilating nitrogen from RDX in munitions contaminated military training range soils by high sensitivity stable isotope probing.
Peter Andeer, David A Stahl, Lorraine Lillis, Stuart E Strand

Environ Sci Technol· September 2013

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Widespread production of extracellular superoxide by heterotrophic bacteria.
Julia M Diaz, Colleen M Hansel, Bettina M Voelker, Chantal M Mendes, Peter F Andeer

Science· June 2013

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High-sensitivity stable-isotope probing by a quantitative terminal restriction fragment length polymorphism protocol.
Peter Andeer, Stuart E Strand, David A Stahl

Appl Environ Microbiol· January 2012

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Lateral transfer of genes for hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) degradation.
Peter F Andeer, David A Stahl, Neil C Bruce, Stuart E Strand

Appl Environ Microbiol· May 2009

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