Publications by authors named "Peter B Otoupal"

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Identification of a Guide RNA Targeting an Ultraconserved Element for Evaluation of Cas9 Genome Editors Across Mammalian Species.
Benjamin G Gowen, Prachi Khekare, Shannon R McCawley, Kory Melton, Craig Soares, Peter B Otoupal

CRISPR J· December 2024

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Engineering transcriptional regulation of pentose metabolism in Rhodosporidium toruloides for improved conversion of xylose to bioproducts.
Samuel T Coradetti, Paul A Adamczyk, Di Liu, Yuqian Gao, Peter B Otoupal

Microb Cell Fact· August 2023

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Engineering Rhodosporidium toruloides for production of 3-hydroxypropionic acid from lignocellulosic hydrolysate.
Di Liu, Hee Jin Hwang, Peter B Otoupal, Gina M Geiselman, Joonhoon Kim

Metab Eng· July 2023

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Advanced one-pot deconstruction and valorization of lignocellulosic biomass into triacetic acid lactone using Rhodosporidium toruloides.
Peter B Otoupal, Gina M Geiselman, Asun M Oka, Carolina A Barcelos, Hemant Choudhary

Microb Cell Fact· December 2022

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CRISPR-RNAa: targeted activation of translation using dCas13 fusions to translation initiation factors.
Peter B Otoupal, Brady F Cress, Jennifer A Doudna, Joseph S Schoeniger

Nucleic Acids Res· August 2022

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Potentiating antibiotic efficacy via perturbation of non-essential gene expression.
Peter B Otoupal, Kristen A Eller, Keesha E Erickson, Jocelyn Campos, Thomas R Aunins

Commun Biol· November 2021

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Facile accelerated specific therapeutic (FAST) platform develops antisense therapies to counter multidrug-resistant bacteria.
Kristen A Eller, Thomas R Aunins, Colleen M Courtney, Jocelyn K Campos, Peter B Otoupal

Commun Biol· March 2021

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Design of a De Novo Aggregating Antimicrobial Peptide and a Bacterial Conjugation-Based Delivery System.
Logan T Collins, Peter B Otoupal, Jocelyn K Campos, Colleen M Courtney, Anushree Chatterjee

Biochemistry· March 2019

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Multiplexed CRISPR-Cas9-Based Genome Editing of .
Peter B Otoupal, Masakazu Ito, Adam P Arkin, Jon K Magnuson, John M Gladden

mSphere· March 2019

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Nucleotide and structural label identification in single RNA molecules with quantum tunneling spectroscopy.
Gary R Abel, Lee E Korshoj, Peter B Otoupal, Sajida Khan, Anushree Chatterjee

Chem Sci· January 2019

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CRISPR Gene Perturbations Provide Insights for Improving Bacterial Biofuel Tolerance.
Peter B Otoupal, Anushree Chatterjee

Front Bioeng Biotechnol· September 2018

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Multiplexed deactivated CRISPR-Cas9 gene expression perturbations deter bacterial adaptation by inducing negative epistasis.
Peter B Otoupal, William T Cordell, Vismaya Bachu, Madeleine J Sitton, Anushree Chatterjee

Commun Biol· September 2018

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High-Throughput Block Optical DNA Sequence Identification.
Dodderi Manjunatha Sagar, Lee Erik Korshoj, Katrina Bethany Hanson, Partha Pratim Chowdhury, Peter Britton Otoupal

Small· January 2018

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Transcriptome-Level Signatures in Gene Expression and Gene Expression Variability during Bacterial Adaptive Evolution.
Keesha E Erickson, Peter B Otoupal, Anushree Chatterjee

mSphere· February 2017

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CRISPR Perturbation of Gene Expression Alters Bacterial Fitness under Stress and Reveals Underlying Epistatic Constraints.
Peter B Otoupal, Keesha E Erickson, Antoni Escalas-Bordoy, Anushree Chatterjee

ACS Synth Biol· January 2017

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Gene Expression Variability Underlies Adaptive Resistance in Phenotypically Heterogeneous Bacterial Populations.
Keesha E Erickson, Peter B Otoupal, Anushree Chatterjee

ACS Infect Dis· November 2015

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D
Decaffeination and measurement of caffeine content by addicted Escherichia coli with a refactored N-demethylation operon from Pseudomonas putida CBB5.
Erik M Quandt, Michael J Hammerling, Ryan M Summers, Peter B Otoupal, Ben Slater

ACS Synth Biol· June 2013

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