Publications by authors named "Peter Cock"

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THAPBI PICT-a fast, cautious, and accurate metabarcoding analysis pipeline.
Peter J A Cock, David E L Cooke, Peter Thorpe, Leighton Pritchard

PeerJ· August 2023

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The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond.
Simon Bray, John Chilton, Matthias Bernt, Nicola Soranzo, Marius van den Beek, Peter J A Cock

Genome Res· February 2023

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DNA Metabarcoding and Isolation by Baiting Complement Each Other in Revealing Diversity in Anthropized and Natural Ecosystems.
Federico La Spada, Peter J A Cock, Eva Randall, Antonella Pane, David E L Cooke

J Fungi (Basel)· March 2022

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BOSC 2021, the 22nd Annual Bioinformatics Open Source Conference.
Nomi L Harris, Peter J A Cock, Christopher J Fields, Karsten Hokamp, Jessica Maia

F1000Res· November 2021

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The Genomic Impact of Selection for Virulence against Resistance in the Potato Cyst Nematode, .
Kyriakos Varypatakis, Pierre-Yves Véronneau, Peter Thorpe, Peter J A Cock, Joanne Tze-Yin Lim

Genes (Basel)· November 2020

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The 21st annual Bioinformatics Open Source Conference (BOSC 2020, part of BCC2020).
Nomi L Harris, Peter J A Cock, Christopher J Fields, Karsten Hokamp, Jessica Maia

F1000Res· October 2020

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BOSC 2019, the 20th annual Bioinformatics Open Source Conference.
Nomi L Harris, Peter J A Cock, Christopher J Fields, Bastian Greshake Tzovaras, Michael Heuer

F1000Res· May 2020

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Parallel Microbial Ecology of and Nematode Species in Scottish Soils.
Jamie N Orr, Roy Neilson, Thomas E Freitag, David M Roberts, Keith G Davies, Peter J A Cock

Front Plant Sci· January 2020

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The 2018 Bioinformatics Open Source Conference (GCCBOSC 2018).
Nomi L Harris, Heather Wiencko, Brad Chapman, Peter J A Cock, Karsten Hokamp

F1000Res· July 2019

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Impact of polyols on Oral microbiome of Estonian schoolchildren.
Jelena Štšepetova, Jaak Truu, Riina Runnel, Rita Nõmmela, Mare Saag, Peter de Cock

BMC Oral Health· April 2019

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Kodoja: A workflow for virus detection in plants using k-mer analysis of RNA-sequencing data.
Amanda Baizan-Edge, Peter Cock, Stuart MacFarlane, Wendy McGavin, Lesley Torrance

J Gen Virol· March 2019

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Shared Transcriptional Control and Disparate Gain and Loss of Aphid Parasitism Genes.
Peter Thorpe, Carmen M Escudero-Martinez, Peter J A Cock, Sebastian Eves-van den Akker, Jorunn I B Bos

Genome Biol Evol· October 2018

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From plants to nematodes: Serratia grimesii BXF1 genome reveals an adaptation to the modulation of multi-species interactions.
Francisco Nascimento, Cláudia Vicente, Peter Cock, Maria Tavares, Márcio Rossi

Microb Genom· July 2018

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Corrigendum to "Acute and sub-chronic oral toxicity studies of erythritol in Beagle dogs" [Food Chem. Toxicol. 105 (2017) 448-455].
Alex K Eapen, Peter de Cock, Christine M Crincoli, Charlotte Means, Tina Wismer

Food Chem Toxicol· December 2017

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The 2017 Bioinformatics Open Source Conference (BOSC).
Nomi L Harris, Peter J A Cock, Brad Chapman, Christopher J Fields, Karsten Hokamp

F1000Res· October 2017

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Acute and sub-chronic oral toxicity studies of erythritol in Beagle dogs.
Alex K Eapen, Peter de Cock, Christine M Crincoli, Charlotte Means, Tina Wismer

Food Chem Toxicol· July 2017

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Evidence for an Opportunistic and Endophytic Lifestyle of the Bursaphelenchus xylophilus-Associated Bacteria Serratia marcescens PWN146 Isolated from Wilting Pinus pinaster.
Cláudia S L Vicente, Francisco X Nascimento, Pedro Barbosa, Huei-Mien Ke, Isheng J Tsai, Peter J A Cock

Microb Ecol· October 2016

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The 2016 Bioinformatics Open Source Conference (BOSC).
Nomi L Harris, Peter J A Cock, Brad Chapman, Christopher J Fields, Karsten Hokamp

F1000Res· October 2016

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Erythritol Is More Effective Than Xylitol and Sorbitol in Managing Oral Health Endpoints.
Peter de Cock, Kauko Mäkinen, Eino Honkala, Mare Saag, Elke Kennepohl

Int J Dent· September 2016

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The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence.
Sebastian Eves-van den Akker, Dominik R Laetsch, Peter Thorpe, Catherine J Lilley, Etienne G J Danchin, Peter J A Cock

Genome Biol· June 2016

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FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation.
Jerven T Bolleman, Christopher J Mungall, Francesco Strozzi, Joachim Baran, Michel Dumontier, Peter J A Cock

J Biomed Semantics· June 2016

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The genome and genetics of a high oxidative stress tolerant Serratia sp. LCN16 isolated from the plant parasitic nematode Bursaphelenchus xylophilus.
Claudia S L Vicente, Francisco X Nascimento, Yoriko Ikuyo, Peter J A Cock, Manuel Mota

BMC Genomics· April 2016

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Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets.
Peter Thorpe, Peter J A Cock, Jorunn Bos

BMC Genomics· March 2016

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Gene expression changes in diapause or quiescent potato cyst nematode, Globodera pallida, eggs after hydration or exposure to tomato root diffusate.
Juan Emilio Palomares-Rius, Pete Hedley, Peter J A Cock, Jenny A Morris, John T Jones

PeerJ· February 2016

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The 2015 Bioinformatics Open Source Conference (BOSC 2015).
Nomi L Harris, Peter J A Cock, Hilmar Lapp, Brad Chapman, Rob Davey

PLoS Comput Biol· February 2016

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