Publications by authors named "Peter D Tonner"

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Epistasis in Allosteric Proteins: Can Biophysical Models Provide a Better Framework for Prediction and Understanding?
David Ross, Drew S Tack, Peter D Tonner, Olga B Vasilyeva

J Mol Biol· October 2025

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Precision engineering of biological function with large-scale measurements and machine learning.
Drew S Tack, Peter D Tonner, Abe Pressman, Nathan D Olson, Sasha F Levy

PLoS One· March 2023

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Method for reproducible automated bacterial cell culture and measurement.
David Ross, Peter D Tonner, Olga B Vasilyeva

Synth Biol (Oxf)· August 2022

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Interpretable modeling of genotype-phenotype landscapes with state-of-the-art predictive power.
Peter D Tonner, Abe Pressman, David Ross

Proc Natl Acad Sci U S A· June 2022

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Predicted coronavirus Nsp5 protease cleavage sites in the human proteome.
Benjamin M Scott, Vincent Lacasse, Ditte G Blom, Peter D Tonner, Nikolaj S Blom

BMC Genom Data· April 2022

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The genotype-phenotype landscape of an allosteric protein.
Drew S Tack, Peter D Tonner, Abe Pressman, Nathan D Olson, Sasha F Levy

Mol Syst Biol· December 2021

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The genotype-phenotype landscape of an allosteric protein.
Drew S Tack, Peter D Tonner, Abe Pressman, Nathan D Olson, Sasha F Levy

Mol Syst Biol· March 2021

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A Bayesian non-parametric mixed-effects model of microbial growth curves.
Peter D Tonner, Cynthia L Darnell, Francesca M L Bushell, Peter A Lund, Amy K Schmid

PLoS Comput Biol· October 2020

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Measurements drive progress in directed evolution for precise engineering of biological systems.
Drew S Tack, Eugenia F Romantseva, Peter D Tonner, Abe Pressman, Jayan Rammohan

Curr Opin Syst Biol· October 2020

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Synergistic Impacts of Organic Acids and pH on Growth of : A Comparison of Parametric and Bayesian Non-parametric Methods to Model Growth.
Francesca M L Bushell, Peter D Tonner, Sara Jabbari, Amy K Schmid, Peter A Lund

Front Microbiol· January 2019

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Transcriptional Regulation in Archaea: From Individual Genes to Global Regulatory Networks.
Mar Martinez-Pastor, Peter D Tonner, Cynthia L Darnell, Amy K Schmid

Annu Rev Genet· November 2017

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Systematic Discovery of Archaeal Transcription Factor Functions in Regulatory Networks through Quantitative Phenotyping Analysis.
Cynthia L Darnell, Peter D Tonner, Jordan G Gulli, Scott C Schmidler, Amy K Schmid

mSystems· September 2017

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A transcription network of interlocking positive feedback loops maintains intracellular iron balance in archaea.
Mar Martinez-Pastor, W Andrew Lancaster, Peter D Tonner, Michael W W Adams, Amy K Schmid

Nucleic Acids Res· September 2017

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Detecting differential growth of microbial populations with Gaussian process regression.
Peter D Tonner, Cynthia L Darnell, Barbara E Engelhardt, Amy K Schmid

Genome Res· February 2017

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A regulatory hierarchy controls the dynamic transcriptional response to extreme oxidative stress in archaea.
Peter D Tonner, Adrianne M C Pittman, Jordan G Gulli, Kriti Sharma, Amy K Schmid

PLoS Genet· January 2015

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