Publications by authors named "Peter Schaap"

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Deep sequencing of 16 ticks unveils insights into their interactions with endosymbionts.
Paulina M Lesiczka, Tal Azagi, Aleksandra I Krawczyk, William T Scott, Ron P Dirks, Peter J Schaap

mSystems· July 2025

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Implementation of a genome-scale model for upgrading syngas fermentations.
William T Scott, Siemen Rockx, Quinten Mariën, Alberte Regueira, Pieter Candry, Peter J Schaap

Comput Struct Biotechnol J· January 2025

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Genes controlling hydrolysate toxin tolerance identified by QTL analysis of the natural Saccharomyces cerevisiae BCC39850.
Warasirin Sornlek, Chutima Sonthirod, Sithichoke Tangphatsornruang, Supawadee Ingsriswang, Weerawat Runguphan, Peter J Schaap

Appl Microbiol Biotechnol· December 2024

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Identification of genes associated with the high-temperature fermentation trait in the Saccharomyces cerevisiae natural isolate BCC39850.
Warasirin Sornlek, Nattida Suwanakitti, Chutima Sonthirod, Sithichoke Tangphatsornruang, Supawadee Ingsriswang, Peter J Schaap

Arch Microbiol· September 2024

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Metatranscriptomic analysis indicates prebiotic effect of isomalto/malto-polysaccharides on human colonic microbiota in-vitro.
Klaudyna Borewicz, Bastian Hornung, Fangjie Gu, Pieter H van der Zaal, Henk A Schols, Peter J Schaap

Sci Rep· August 2024

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Biobased short chain fatty acid production - Exploring microbial community dynamics and metabolic networks through kinetic and microbial modeling approaches.
Merve Atasoy, William T Scott, Alberte Regueira, Miguel Mauricio-Iglesias, Peter J Schaap

Biotechnol Adv· June 2024

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Author Correction: A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses.
Andra Waagmeester, Egon L Willighagen, Andrew I Su, Martina Kutmon, Jose Emilio Labra Gayo, Peter J Schaap

BMC Biol· November 2023

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Managing discolouration in drinking water distribution systems by integrating understanding of material behaviour.
Joby Boxall, Mirjam Blokker, Peter Schaap, Vanessa Speight, Stewart Husband

Water Res· September 2023

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A structured evaluation of genome-scale constraint-based modeling tools for microbial consortia.
William T Scott, Sara Benito-Vaquerizo, Johannes Zimmermann, Djordje Bajić, Almut Heinken, Peter J Schaap

PLoS Comput Biol· August 2023

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Identification of Aquaporins Involved in Hydrogen Peroxide Signaling.
Thanaporn Laothanachareon, Enrique Asin-Garcia, Rita J M Volkers, Juan Antonio Tamayo-Ramos, Vitor A P Martins Dos Santos, Peter J Schaap

J Fungi (Basel)· April 2023

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Model-driven approach for the production of butyrate from CO/H by a novel co-culture of and .
Sara Benito-Vaquerizo, Niels Nouse, Peter J Schaap, Jeroen Hugenholtz, Stanley Brul

Front Microbiol· December 2022

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FAIR data station for lightweight metadata management and validation of omics studies.
Bart Nijsse, Peter J Schaap, Jasper J Koehorst

Gigascience· December 2022

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D-Lactic Acid Production from Sugarcane Bagasse by Genetically Engineered .
Warasirin Sornlek, Kittapong Sae-Tang, Akaraphol Watcharawipas, Sriwan Wongwisansri, Sutipa Tanapongpipat, Peter J Schaap

J Fungi (Basel)· August 2022

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SALARECON connects the Atlantic salmon genome to growth and feed efficiency.
Maksim Zakhartsev, Filip Rotnes, Marie Gulla, Ove Øyås, Jesse C J van Dam, Peter J Schaap

PLoS Comput Biol· June 2022

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Genome-scale metabolic modelling enables deciphering ethanol metabolism via the acrylate pathway in the propionate-producer Anaerotignum neopropionicum.
Sara Benito-Vaquerizo, Ivette Parera Olm, Thijs de Vroet, Peter J Schaap, Diana Z Sousa

Microb Cell Fact· June 2022

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Classification of the plant-associated lifestyle of Pseudomonas strains using genome properties and machine learning.
Wasin Poncheewin, Anne D van Diepeningen, Theo A J van der Lee, Maria Suarez-Diez, Peter J Schaap

Sci Rep· June 2022

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Assembly and Comparison of Neoehrlichia mikurensis Genomes.
Tal Azagi, Ron P Dirks, Elena S Yebra-Pimentel, Peter J Schaap, Jasper J Koehorst

Microorganisms· May 2022

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From Innovation to Application: Bridging the Valley of Death in Industrial Biotechnology.
Linde F C Kampers, Enrique Asin-Garcia, Peter J Schaap, Annemarie Wagemakers, Vitor A P Martins Dos Santos

Trends Biotechnol· December 2021

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Machine learning approaches to predict the Plant-associated phenotype of Xanthomonas strains.
Dennie Te Molder, Wasin Poncheewin, Peter J Schaap, Jasper J Koehorst

BMC Genomics· November 2021

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Genomic convergence between Akkermansia muciniphila in different mammalian hosts.
Sharon Y Geerlings, Janneke P Ouwerkerk, Jasper J Koehorst, Jarmo Ritari, Steven Aalvink, Peter J Schaap

BMC Microbiol· October 2021

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A chromosome-level assembly of the black tiger shrimp (Penaeus monodon) genome facilitates the identification of growth-associated genes.
Tanaporn Uengwetwanit, Wirulda Pootakham, Intawat Nookaew, Chutima Sonthirod, Pacharaporn Angthong, Peter J Schaap

Mol Ecol Resour· July 2021

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Global Transcriptional Response of to Blocked Active Citrate Export through Deletion of the Exporter Gene.
Thanaporn Laothanachareon, Lyon Bruinsma, Bart Nijsse, Tom Schonewille, Maria Suarez-Diez, Peter J Schaap

J Fungi (Basel)· May 2021

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Experimental infrastructure requirements for quantitative research on microbial communities.
Robbert Kleerebezem, Gerben Stouten, Jasper Koehorst, Alette Langenhoff, Peter Schaap

Curr Opin Biotechnol· February 2021

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Genome-scale metabolic modeling underscores the potential of Cutaneotrichosporon oleaginosus ATCC 20509 as a cell factory for biofuel production.
Nhung Pham, Maarten Reijnders, Maria Suarez-Diez, Bart Nijsse, Jan Springer, Peter J Schaap

Biotechnol Biofuels· January 2021

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A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses.
Andra Waagmeester, Egon L Willighagen, Andrew I Su, Martina Kutmon, Jose Emilio Labra Gayo, Peter J Schaap

BMC Biol· January 2021

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